AMCG00016059 (foxo1)


Basic Information

Item Value
gene id AMCG00016059
gene name foxo1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4424988 ~ 4427749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016059
ATGGCTGAAGCTCCGCAGCAACAAGTGGTGGAGATCGACCCGGATTTTGAGCCGCTCTCACGGCCCCGGTCTTGCACCTGGCCGCTGCCGCGACCCGAGTTTATTAACCCTGCCAACTCCAACACCTCGTCACCAGCCCCTTCCGTGCAGCAGGAGCCCGGCGGCAATGTCGACTTCATTAACAATCTCAGTTTGCTGGAGGAGAGTGAAGACTACCCCGACCAGAAGCCGCTTGTGCTGTGCAATGATTTCCAGTGCCGGGAGACCTGTGTCCACCAGCCgtcacagcagcagcatcagcacCCGAGCCCCCAGCTCCCGCACCAGCAGCAGGTGCCGCCCCTGTCCTCCCCGGCCGGCTCGGCCGCCTCGGTGGCTGCTGCTGCCCAGCGGAAGAGCAGCTCCTCTCGACGCAATGCCTGGGGAAATATGTCTTACGCCGACCTGATCACCAAAGCCATCGAGAGCTCTCCCGAGAAGCGCCTCACCTTGTCGCAGATCTACGACTGGATGGTCAAGAGCGTCCCCTACTTCAAGGACAAGGGCGACAGCAACAGCTCCGCCGGCTGGAAGCGCAGTGTAAGAGCTCGGCCCCTCTGTGAGAAGCAGTGA

Function

symbol description
foxo1 Enables several functions, including DNA-binding transcription factor activity; beta-catenin binding activity; and ubiquitin protein ligase binding activity. Involved in several processes, including cellular response to hyperoxia; positive regulation of catabolic process; and regulation of apoptotic process. Located in cytoplasm and nucleus. Implicated in alveolar rhabdomyosarcoma. Biomarker of congestive heart failure; hepatocellular carcinoma; and prostate cancer.

NR:

description
PREDICTED: forkhead box protein O1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016059 True 612 mRNA 0.62 2 4424988 4427749

Neighbor

gene id symbol gene type direction distance location
AMCG00016058 NA coding downstream 46828 4376445 ~ 4378160 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding downstream 319257 4104731 ~ 4105731 (-)
AMCG00016048 NA coding downstream 477553 3928734 ~ 3947435 (-)
AMCG00016050 NA coding downstream 589633 3823251 ~ 3835355 (-)
AMCG00016045 NA coding downstream 640492 3783534 ~ 3784496 (-)
AMCG00016063 NA coding upstream 15667 4443416 ~ 4451855 (-)
AMCG00016064 LOC105011210,LOC107718790 coding upstream 48590 4476339 ~ 4490665 (-)
AMCG00016062 NA coding upstream 79714 4507463 ~ 4517486 (-)
AMCG00016065 vps36,LOC107701118 coding upstream 90821 4518570 ~ 4532263 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding upstream 148795 4576544 ~ 4582296 (-)
G10740 NA non-coding downstream 51267 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 69692 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 254650 4166778 ~ 4170338 (-)
G10698 NA non-coding downstream 437033 3987653 ~ 3987955 (-)
G10696 NA non-coding downstream 445871 3977559 ~ 3979117 (-)
G10805 NA non-coding upstream 158974 4586723 ~ 4587875 (-)
G10806 NA non-coding upstream 164071 4591820 ~ 4592077 (-)
G10812 NA non-coding upstream 194982 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 210701 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 212040 4639789 ~ 4641030 (-)
AMCG00016049 NA other downstream 504485 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 882452 3528842 ~ 3542536 (-)
G10478 NA other downstream 1389805 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1578631 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1714303 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 476107 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3253162 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3691472 8119221 ~ 8124033 (-)
G11326 NA other upstream 3763797 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4395796 8823545 ~ 8827760 (-)

Expression


Co-expression Network