RNA id: AMCG00016059


Basic Information

Item Value
RNA id AMCG00016059
length 612
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00016059
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4424988 ~ 4427749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAAGCTCCGCAGCAACAAGTGGTGGAGATCGACCCGGATTTTGAGCCGCTCTCACGGCCCCGGTCTTGCACCTGGCCGCTGCCGCGACCCGAGTTTATTAACCCTGCCAACTCCAACACCTCGTCACCAGCCCCTTCCGTGCAGCAGGAGCCCGGCGGCAATGTCGACTTCATTAACAATCTCAGTTTGCTGGAGGAGAGTGAAGACTACCCCGACCAGAAGCCGCTTGTGCTGTGCAATGATTTCCAGTGCCGGGAGACCTGTGTCCACCAGCCgtcacagcagcagcatcagcacCCGAGCCCCCAGCTCCCGCACCAGCAGCAGGTGCCGCCCCTGTCCTCCCCGGCCGGCTCGGCCGCCTCGGTGGCTGCTGCTGCCCAGCGGAAGAGCAGCTCCTCTCGACGCAATGCCTGGGGAAATATGTCTTACGCCGACCTGATCACCAAAGCCATCGAGAGCTCTCCCGAGAAGCGCCTCACCTTGTCGCAGATCTACGACTGGATGGTCAAGAGCGTCCCCTACTTCAAGGACAAGGGCGACAGCAACAGCTCCGCCGGCTGGAAGCGCAGTGTAAGAGCTCGGCCCCTCTGTGAGAAGCAGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13313 lncRNA downstream 51267 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 69692 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 254650 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 437033 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 445871 3977559 ~ 3979117 (-) True G10696
TU13391 lncRNA upstream 158974 4586723 ~ 4587875 (-) True G10805
TU13392 lncRNA upstream 164071 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 194982 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 210701 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 212040 4639789 ~ 4641030 (-) True G10823
AMCG00016058 mRNA downstream 46828 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016053 mRNA downstream 319257 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016048 mRNA downstream 477553 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016049 mRNA downstream 504485 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016050 mRNA downstream 589633 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016063 mRNA upstream 15667 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016064 mRNA upstream 48590 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016062 mRNA upstream 79714 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016065 mRNA upstream 90821 4518570 ~ 4532263 (-) True AMCG00016065
AMCG00016073 mRNA upstream 148795 4576544 ~ 4582296 (-) True AMCG00016073
TU13237 other downstream 504564 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 885795 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1389805 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1714303 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3763797 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6419085 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6419182 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7895412 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8434350 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile