RNA id: TU13266


Basic Information

Item Value
RNA id TU13266
length 1559
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G10696
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3977559 ~ 3979117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attctacATTGTATAGTGACAGTCAAGAAAAACAGTACAGTGttagacttttaaaatgtttatgagAATATTAACCCAGACCTTCATATTCAAAAAAAGCCTGACCACTCTACATTGCACTCCACaaattacacatattttaaagaataaacacattacattacaaaaaatagaGTGGAAATCCTTAAAATTCAGAGCAAGGTTACCAAATATACAgacatatgtaaatatgtatttacctttttattacaaaacattacatatatacaaaagaaTACATgttaacatacatacattttaactgtCAGGGTGGAACCAGGTAAAAAGTGTATTATGCATTTCTGCTGAACTAGCTTTCATCTTTCAAATACATGGTCTAACATTACAGAGTAATTACAGGTAAATCCAGttaaattagttttacattactaaaatgtactttattgaGTAAATCTAATTACTGGATTTATTCAGTAATTACAAATGACTTCAAATGTTGGTACATTTCAGAATACTActttccttttgtttgcttCCTGTTATGTACAGTTCCACAAGAGAttagaataataaaaaggaatgaATAAATTCCATGTTTGACCATCAAATGGTAATTGGCACACAGCTGTAGCAGATGTATTGATCatctgtgtatatacacacacatatacacacacacacacacatatacagctctggaaaaaattaagagaccactgcaaatttatcttaaatcagcatctctacatgactggcagccattccattccagtgtctgctgAATTCCAaaacaggcacacctcattctactgaatgaggcagtgattaggtgatcacctgaaccaaaatttaacgaggaaaagtataaaaaccactgctgtggtcatcactatcctcttgaaATACGACCAGccggatggcaaaaacagtgctagcaGTACctaaaaagtaattggaatcaaaaaattacTATTGACCAcaccaaaagagttgaaaaggaaagttttgagtgaggaaaagaagtgttcagttctggctttactgggagagggatacagtgagcgtcgtgttgcttccatccttaaaatgtcaaagacggcggttcataagaacaaggtcaagcagcagacattggggacaacaaagctacagaccggcagagggcgaaaacgactctccactgactggGATGAATGCCAActcatttgaatgtcactcaacaactgtaggatgacatcaggtgacctacaaaaagaatggcaagcggcagctggggtgaagggCATGGCGAGGGcggttcgaaacaggctcctaggggcagggctgaagtcgtgcaaagctagaaaaaagcaaatgagaagcaaagaagagccaggctgaggtttacaaaagaccataaggattggaccgtagatgactggagtaaggtcatcttctctgatgagtccaattatCAGCTTTtcccaacacctggtcgtctaatggttagacggaaaCCTGGAGatgcctacaagccacagtgtctcgcacccactgtgaaatttggtggaggatcggtg

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13262 lncRNA downstream 4048 3971886 ~ 3973511 (-) True G10692
TU13241 lncRNA downstream 65287 3869724 ~ 3912272 (-) True G10673
TU13179 lncRNA downstream 235297 3741593 ~ 3742262 (-) True G10624
TU13140 lncRNA downstream 430468 3490758 ~ 3547091 (-) True G10592
TU13268 lncRNA upstream 8536 3987653 ~ 3987955 (-) True G10698
TU13286 lncRNA upstream 187661 4166778 ~ 4170338 (-) True G10715
TU13308 lncRNA upstream 375736 4354853 ~ 4355296 (-) True G10735
TU13313 lncRNA upstream 392348 4371465 ~ 4373721 (-) True G10740
TU13391 lncRNA upstream 607606 4586723 ~ 4587875 (-) True G10805
AMCG00016048 mRNA downstream 30124 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016049 mRNA downstream 57056 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016050 mRNA downstream 142204 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 193063 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016047 mRNA downstream 309001 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016053 mRNA upstream 125614 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016058 mRNA upstream 397328 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 445871 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 464299 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016064 mRNA upstream 497222 4476339 ~ 4490665 (-) True AMCG00016064
TU13237 other downstream 57135 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 438366 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 942376 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1266874 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 4212429 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6867717 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6867814 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8344044 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8882982 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile