RNA id: AMCG00016064


Basic Information

Item Value
RNA id AMCG00016064
length 3503
RNA type mRNA
GC content 0.42
exon number 14
gene id AMCG00016064
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4476339 ~ 4490665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTCAAACACAgaattagtatggtgttcctaataatcctttaggtgagtgtatttcatGATGGATGTGACGTTGCACTTCTTGTGAGATAACCCATTTTAAATCATCACTGTTCTAGCAGGAGAGGGACAAAGGTCAGAAAATTCAGAATGTAATTTCTGGATTAGGGATTTAAGGAATCTGTAatctgtgtaaaaatatatgACACTCTCAATAGTAAGAAGTAGATTTGGAAATAATTCCTGAATTGTACAGAGAATCAGGGCACCCCATTAAGAATCAGTTCCAAAAAGGCAGACATGTCTCATTCTAAGTGAAAAAGCTCTCTCCAAGACTTTCTATCCATATGGACGAAGTTAACTGTGACTATAGTAATGCTTATATAAGGGACAGCCCTAGGTCATTTATCTCAACAAGATATCAGCATGTCTGTAATGAAGGTATTAATGAAAGCATatctttgtctttgttattgGACATGTGCTTTCTATTGAGAGGAATGAAACTGTAGAGAAGCTGTGCTTgtttatagatgtgtgtgtgtgtgtatatatatatatatatacttttttctacTACCCCATGTCTTTCCATGTgaagtcaatcaatcaatcaaccaatcaatcgATCTGTTTTATGTAGTACAGCACCCACTGCAAAGTTGCCAGCGGAGCGCTTCACAGATTAAAAGAACGATGTTCTGTAAATGCAAAAGTAAAGCACAAGGCATGGAGgagataaatattaaaactcCTATAGGATGACAGGCTGTACCATAAGCAGTTCAATTATCAGAGTCTAagatgaggaagagggggggggaagCCAAAGGAAGTGTCAGGGATGCAGTCAATGCTGTGCCAAAGATTATAGATGGCAGTGtgagaaggaaggagggatTTAACTGTGGTGTGTCTGTTTATGCAGGATATTCGGTGTGGTGCTCATTATGGTGGACATCATCCTGGTCATCGCTGATCTGGCAACGCCAGACAAAAGCAAGGAAGCAAGGGATGCCCTAGAAGGCATATCTTTAGCAATCTCACTGTTCTTTATGATTGACGTACTCCTCCGGGTCTATGTGGAAGGGTAAGGCAGACCAACATGAAACTCCATTGCACCGTCATGCTGCTGGCACAAAACCTAAACAGGAATGAGAGCAGATTTGGTTATTGTGGCTTAAAGGTTGTcttcttttcatcttttattaGGTAAGTGTTGTGCAAAAAAAACTCTGGTCCTGCAGAGTCCCAGTTCTACTTAGTTTCATAgatcaccctaaatcaccaattttcaatgatccgaagcataccacctcatctgtgaaacatggtagaggtagtgttatggcatgggcatgtatggctggcAAGGGAACTGGTtaccttgtatttattgatgatgcgattgctgacaaaagcagcaggatgaattctgaagagctatattatctgctcagattcagccaaatgcttcaaaactcattggatggcgcttcacagtATAGATGGACAATGActcgaagcatactgcgaaagcaacccaagacttttttaaggtgaagaagtggaatgttctgcaatggccaagtcaatcacctgacctgaatccaattgagcagcatttcacttgctgaaggcaaaacaccccaagaacaagcaggaactaaagacagctgcagtataggcctggcagagcatcaccagggaagaaacccagcatctggtgatatctatgggttccagacttcaggcagtcattgactgcaaacaatttgcaaccaagtattgaaactcacaatttaattcatgattatgttagtttgtccaaatactttttagcccctaaaattggaggaccacatgtaaaaatgggtgtaattcctacacagCTACATCCATATTGGATgataactaccctcaaattaaagatgaaagtctacacttcaagcacatcttgattgtttcaaatccattgtggtggcatacagagccaaaatgatgacaattgtgtcactgtccaaatatttttggacctaactgtataaatgAATATTGTTAGTAGAAACAATGTTGTTCCAAATATTAAATCTGAGCACAGGCTACATGATGAAAAATGTAGATATTAAATAGTAATCCAGCAGCAAGACTAAATCAGTTGGACTGCATCTGACCATTAGCCCCTGTGTCCGACTAGCTGCTACAGCAACCGAAGCTTCATGGGAATTGCAGATGTTGACTGTCTTATCCCTGTGTGTGAAACTCCCTTTGTTCAGTGGAAACCTGAAGGTTTTGTCTTGTTTCAGCTTCCATACATACTTCAGCTCCAAGCTGAACATTGTGGATGCCTGCATCGTTGTCATCACCCTTATTGTCACCATGGTCTACACTTTCTCTGACTTGACGGGTGCCAAACTGATCCCCAGAATGGTGTCGTTCCTGAGGGCTCTAAGGATCGTCATCCTGGTCAGGATCTTTAGGCTGGCCTCTCAGAGGAAGGACCTGGAGAAGGCCACCAGGAGAATGGTCTCTGAAAACAAAAGACGCTATCAGAAGGATGGCTTTGACCTCGACCTGACTTATGTAACCGATCGCATCATTGCAATGTCCTTCCCATCATCAGGGAAACAGTCTTTCTACAGGAATCCTATTAGGGAAGTTGCAAGATTCCTCGACATGAAGCACAAGCATCACTACAAAGTCTATAACCTATGCAgtGAGAAGGGCTATGATCCACAGAACTTCCATTACAGAGTGGAACGTGTCTTCATTGATGACCACAATGTGCCTGTGCTTGAGGACATGCTGAAATACACGGCCAGTGTGCGGGAATGGATGGCGGCAGACCCTCTCAACATCATCGCTATCCACTGCAAGGGTGGGAAAGGTCGCACTGGGACGATGGTGTGTACATGGCTGATAGACAGTGACCAGTTTGAGAGTGCAAAGGAAAGTTTAGATTACTTCGGAGATAGGAGGACTGACTCTAGCATGAGTTCAAAGTTCCAGGGAGTAGAGACTCCATCACAGAGCAGATATGTCGGATATTATGAGATCATCAAGAACAAGTACAGCAGACAGCTACCCCCTGAGAAGAGCCTCAAAATAAGAAGCATCAGAATCCACTCTATATTGGGTGTGGGAAAAGGCAATGGCAGCGACTTGAAGGTGAAAATAATTGTGAAGAAGGAGACAGtctttcagtgtgtttgtgccaCACAAGAGAATTGCAAGatttttcctgATGCCGGCAATAATGCAGTCGTTATCAGTTTGCAAGAAGCTCCTGTTGTCAGTGGAGATGTCAAAGTCATGTTTGAATCCAGTGCTGGTCTTCCTAAAGGTTATGAAGATTGTCCCTTTTATTTCTGGTTCAACACCTCTTTCATTGAGAATAACAGGCTGTACCTGTCCAGAGAAGAGCTAGACAACCCTCACAAAGCAAAGACCTGGGATATCTACAAGGAGGATTTCGGAGTGGAGCTGGCCTTTGGGGAGGTGTAA

Function

GO: NA

KEGG:

id description
K18079 TPTE, TPIP; PTEN homologous phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13313 lncRNA downstream 102618 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 121043 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 306001 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 488384 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 497222 3977559 ~ 3979117 (-) True G10696
TU13391 lncRNA upstream 96058 4586723 ~ 4587875 (-) True G10805
TU13392 lncRNA upstream 101155 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 132066 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 147785 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 149124 4639789 ~ 4641030 (-) True G10823
AMCG00016063 mRNA downstream 24484 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016059 mRNA downstream 48590 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016058 mRNA downstream 98179 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016053 mRNA downstream 370608 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016048 mRNA downstream 528904 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016062 mRNA upstream 16798 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016065 mRNA upstream 27905 4518570 ~ 4532263 (-) True AMCG00016065
AMCG00016073 mRNA upstream 85879 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016072 mRNA upstream 110276 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016071 mRNA upstream 135919 4626584 ~ 4635627 (-) True AMCG00016071
TU13237 other downstream 555915 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 937146 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1441156 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1765654 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3700881 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6356169 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6356266 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7832496 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8371434 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU311617 True 316 lncRNA 0.39 1 NC_048567.1 54733369 ~ 54733684 (+)
mexican tetra (Astyanax mexicanus) TU311617 True 2118 TUCP 0.41 2 NW_019170708.1 173215 ~ 223313 (-)