RNA id: TU13313


Basic Information

Item Value
RNA id TU13313
length 2257
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G10740
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4371465 ~ 4373721 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATGTATCCATTAGtgaattgtgaaaaaataatcgTTTTGTTTTATCATTCCTTTCTCTGTAATCTTGATTGAGCGTATCAACTCAGCAAAATCTGATAAATACATGGACTTTTTTTGTACAGTCCAACTGCAGCAGACCAGAGAAACTGCTCAGAAAAGTTGCAGTTTgtagtaaaaagaaaagaaacagcaaTAAAATGGCATGGTGTAACATGAGTTGTTTGGGCTTTGGAAAGTATACCTCATTTTTACTTTGGATCATTGTTCCATTTTGTAAAGACCTGATCATAGTGAGCACAGTCCTTTCCTCCCATTTCATGTCAGCACCCTAGAGTCGAGTATACTCAACACTGCCATTGAGAGAGGGGACAGATGTTAGAAATCGGGTTTCACAGCTGGCAAGAAACACGTGCCTTTCCTGGAGGAGAAGGAAGCAGCATTTTTGGAAAGTTTTGGAAGGCAACCACTAAAACACCTCAATGAATGCTCAACAACATCATAAAGGACCCTGCTTCAGGAGGGGAATCTGACTGTGAGTCACACTCAGCCAAAGCCCAACCctgatgtaaaatgttttatatgcaaGCAATACCACATCTCAAAAGGAAGTATGTCAGATATTTAGGTGTTACttatatattgatttgtaatgtatatatgtgtttgtgtttttatttaatttaattttttctggTATCAGCACCTCTCACAGCTATGATCGTCTTTGCGTCAAAAGGTATCAGAAACACCGatggaaacaatcaaaaaaggATACCCCACGCCTCATACAGATACAGTGCCCATTTACATTAGTGCTGTCTCCGTTTCTCCGATTGATGGAACTCCCAAGTTAAGTTCGGTATACTAGGCCGGGGTCTAGGACAATTATGGGTCTTTTTAAATCACTGAAAGGCAAGGGGGAACTGAAATTGAACCAGTTAAAGCAGGTAATGAGTTCAGATTACTTAGTAGCAGCTCAGGTAAAGTGAAAACCCGAACATGCTGGTGAATGTCTGAAGGAGCCAGTGCCTGTGCTAGCTGATAAAACTGGATTTGAAATCCATTTGCTGTAACAATCTGAAAAGGAGGTCAAGTTCCATTCATCCAAGTTTCCAAATATTACAATGCGGGGAGGTGTACAGCGAATTCCTGTGAATTGTAATTATTAGATGGAGCTCTGCTTGTATGTCTTATGTACATGTAAATTATTGTACACACTCTGATCAGTTACAGTTTAATTATCTCCATTAACATAAACATTATGGGTCCTTTATGTAAACGGttaagaaataattacaaaaaaactaaaaaaaaaaaaaaattgctttgtGAAATGCTTTGCTAATGATCTCACCTATGCATacttgtactttatttttgttttagttttttgtgatttgtacttatggaaaaaaaaatgttatattgtattatagaGCTGTTGGAGATATTTTATGtcacagatgtatttgtttcagaTAGTTATATGAGAAAAACAATATGAAGTATATTTAGTTATTAGACAAAATGATTTGCTCTGCTTTTTTGGTAAACTGACACTGTTATTCTTGTACTTAGTTGAAGTTCAtaagaaaactttaaaatgtagaaaaaaaaagttgtgttaatgaaaaaataaaaacaaaataaaaagttttagCAGTTTGCTGGAAAGGAGATATTTGGACCAATTTTTataaaggcagaaaaaaaagaattttgcacttctgtaacattttataatcagTGCTCCTCACTgatggaattaaaacaaaagaaaacaaacaaaaacatgttacttattattttaaatctgttacaTTTCTGAACTCATGAACAGTAATTGATATGAATTTTATGTGATTtgcaatcaaaaacaaaaacagactgcaATGTGTTggtttatataaagaaataaaatctatatgTTTGAAAGCAGGAGCGTGCCCTTTGTTTAAGGGATTATTggcttaaatataaataaatatttcttgcAGTGGGCTGGTTGGCATCAAGCATAATTAGAAAATGCCTCTGCTTTATATTgactgaaaatacacacacacacacacacacacaaacacagacacacacacaaacaatttagtaaataaatacatgaaccaTAGTGCTTTCTTGCATGCTTCTCAGAGAACAAGTGCCTGATGATGTTGTACTATGAACATGAATATGGACAAGAACACTCTTGGCAGTCGCTGTAATGAAGCCATAcatgtacataaataatattaca

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0015031 protein transport biological_process
GO:0071702 organic substance transport biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0008104 protein localization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13308 lncRNA downstream 16169 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 201127 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 383510 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 392348 3977559 ~ 3979117 (-) True G10696
TU13262 lncRNA downstream 397954 3971886 ~ 3973511 (-) True G10692
TU13391 lncRNA upstream 213002 4586723 ~ 4587875 (-) True G10805
TU13392 lncRNA upstream 218099 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 249010 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 264729 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 266068 4639789 ~ 4641030 (-) True G10823
AMCG00016053 mRNA downstream 265734 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016048 mRNA downstream 424030 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016049 mRNA downstream 450962 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016050 mRNA downstream 536110 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 586969 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016058 mRNA upstream 2724 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 51267 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 69695 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016064 mRNA upstream 102618 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016062 mRNA upstream 133742 4507463 ~ 4517486 (-) True AMCG00016062
TU13237 other downstream 451041 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 832272 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1336282 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1660780 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3817825 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6473113 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6473210 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7949440 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8488378 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile