AMCG00016252


Basic Information

Item Value
gene id AMCG00016252
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13655038 ~ 13675532 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016252
TCAGATATAGATTTGTTTCAGCGCCGTCTGCTATTAGTGTGGTGCTGCATCGCCGTCATCATGGCATGGCCCTGTATCACCAGGGCGTGCTGTATCGCCCGCTTCTGGAATCAGCTGGATAAAGCCGACATCGCGGTGCCGCTGGTGTTCACGAAGTACTCGGACGTGGCCGAGGTGCAGCACCTGCacgcccagcagcagcagcagagaccCGCGGCCCCCCAGCGCGCCGGCGCCGTAGAGACCCAGCCCTGCCTCGGCGAGCCGGAGGCGGGTGGCAGGGCGCGGCCCGCTGCGGGAGCCGAGGGCAGCCCGGGCGGCTCGGTGATGCGCCAGGACTACAAGCCCTGGAAAGTGCGCCCGGAGCCCAGCTGCAAGCCCAAGAGCGAGTACCACCCTTCAGAAACGCCCTTCAACAACGAGACCCAATACCAGAAGGATTTCAAGCCATGGCCTATTCCCAAAAGAGGGGACCATCCTTGGATCCCCAAACCTAGCCCGACGTCCTCCGTCGCCGGCGACCGCGCACCGGAAAAGCCGGGGCCTGCTCCTGCCGTGGCCGAGGCGGAAAGTGGTCTGGAGAAAAGTGAAATAGCCGACAGAGTGCCAGAAAAGGAGATCCTGTCTGAagagaagaagatgaagaagcaGGTGAAGAAAGCCCCTGTGGCCGAGAAGCCCGAAAAGAAAGCGGTGGTCAAAGTTCAAAAAGAGGCCGCAGGTCTCGCCTCAGAGGGCGGCGGGAGGGCGGCTGCGGATGCGCTAAACCGGCAGATCAAGCAGGAGGTGTCAGCTGGCAGCTCGTACAGGAACGAGTTCAAAGCCTACACGGATGTGAAGCCAGTGAAAGCTATTAGAGCCCGGTCTCTGTACAAGCCCCCAGACGAGAAGACCTCTGTGGAGACCAGCTACAGTGCCACCTTCAAAGGGGAGCAGGGTAAACGTCCACCCGCAGATAACAAAGTAGTGGATCGCAGAAGAATACGCAGTCTATACAGCGAACCCTACAAAGAATCAAGCAAGGTTGAGAAGCCCACCGTGCAGCgctcaaaaccaaaaaagacaaCAAGCCATAGCAAACCTGTGAAAAAAGCCAAAGAGAAGCAGATCACTTCGGGCCACAGCACCAAGAAGAAATCCTCCGAGAACACCCCCGACTCCAAGCCAGAGGAAGGGGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCTAAAGAAGGCCCCCAGGTTGAGGTTTGTGGATCCAGTGATCATCCCTCGAGTGCCGTTGGAGGAGAACCAGAGCCACAAGTGGAAAGACCGCGGCCGCGAAGAGGTAGCGGAGTCGTGCGCTTTGCACCTGATGTAAAATAA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K10432 MAP6; microtubule-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016252 True 1362 mRNA 0.58 4 13655038 13675532

Neighbor

gene id symbol gene type direction distance location
AMCG00016251 NA coding downstream 59887 13584907 ~ 13595151 (-)
AMCG00016245 NA coding downstream 72372 13562171 ~ 13582666 (-)
AMCG00016247 zgc:112083,LOC108278169,LOC107726099,LOC107662779 coding downstream 112403 13535694 ~ 13542635 (-)
AMCG00016244 NA coding downstream 120063 13522174 ~ 13534975 (-)
AMCG00016248 NA coding downstream 160464 13484337 ~ 13494574 (-)
AMCG00016257 wnt11 coding upstream 154228 13829760 ~ 13840039 (-)
AMCG00016258 NA coding upstream 183801 13859333 ~ 13874048 (-)
AMCG00016259 NA coding upstream 199203 13874735 ~ 13879998 (-)
AMCG00016262 NA coding upstream 237390 13912922 ~ 13921956 (-)
AMCG00016263 NA coding upstream 261091 13936623 ~ 13936850 (-)
G12358 NA non-coding downstream 15448 13638303 ~ 13639590 (-)
G12359 NA non-coding downstream 15888 13627255 ~ 13639150 (-)
G12235 NA non-coding downstream 554814 13097991 ~ 13100224 (-)
G12096 NA non-coding downstream 1016340 12638493 ~ 12638698 (-)
G12058 NA non-coding downstream 1263630 12387798 ~ 12391408 (-)
G12585 NA non-coding upstream 752093 14427625 ~ 14428817 (-)
G12594 NA non-coding upstream 756080 14431612 ~ 14436531 (-)
G12595 NA non-coding upstream 788085 14463617 ~ 14463823 (-)
G12702 NA non-coding upstream 1517670 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 1741491 15417023 ~ 15417518 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 95854 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 784478 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 1326005 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 1707716 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 1873491 11766152 ~ 11781547 (-)
AMCG00016281 NA other upstream 744824 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 1109666 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 2795079 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 3183009 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 3190786 16866318 ~ 16870002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15723867_15741978 NA coding CI01000304 null 15723867 ~ 15742863 (+)