AMCG00016303


Basic Information

Item Value
gene id AMCG00016303
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15137408 ~ 15139859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016303
ATGGCCCACCAGAGCGCTGTACCCGACATTGATGTCACACGGCTATGTGGATCAGTGGACGGAGTCATTGTGTGGCAGTTCAGCACGCTCTTCTCCACCGTAGACAGATGGTGCTTTGATGATGTCCCCTCCATGTCAGAGCACCTGAAGGTCTGTCCTTTCTACCAGACAGAAGTGAGGAGTGAGCCGGTGGGGCTGACCAGCATGTGTGAAGCTGATGCACAAAGATCTGAGAGACAGCAGAGGCCGAGCCTGGTGTCACAgatcttaaaaacaagaaaacatttgccatga

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016303 True 294 mRNA 0.52 2 15137408 15139859

Neighbor

gene id symbol gene type direction distance location
AMCG00016294 NA coding downstream 286295 14849850 ~ 14851113 (-)
AMCG00016289 zpld1,LOC105030973,LOC103372413 coding downstream 403950 14709388 ~ 14733458 (-)
AMCG00016287 NA coding downstream 545450 14577857 ~ 14591958 (-)
AMCG00016282 NA coding downstream 681356 14437388 ~ 14456052 (-)
AMCG00016283 tiprl coding downstream 743747 14389509 ~ 14393661 (-)
AMCG00016302 NA coding upstream 502 15140361 ~ 15142142 (-)
AMCG00016304 NA coding upstream 2397 15142256 ~ 15358334 (-)
AMCG00016310 NA coding upstream 417010 15556869 ~ 15564100 (-)
AMCG00016308 trpc6a,LOC108429885,LOC108264040,LOC107691992,LOC107713306 coding upstream 437574 15577433 ~ 15596800 (-)
AMCG00016309 NA coding upstream 481197 15621056 ~ 15624452 (-)
G12595 NA non-coding downstream 673585 14463617 ~ 14463823 (-)
G12594 NA non-coding downstream 700877 14431612 ~ 14436531 (-)
G12585 NA non-coding downstream 708591 14427625 ~ 14428817 (-)
G12373 NA non-coding downstream 1477749 13657443 ~ 13659659 (-)
G12358 NA non-coding downstream 1497818 13638303 ~ 13639590 (-)
G12702 NA non-coding upstream 53343 15193202 ~ 15193641 (-)
G12707 cntn5 non-coding upstream 277164 15417023 ~ 15417518 (-)
G12743 NA non-coding upstream 407191 15547050 ~ 15605487 (-)
G12807 NA non-coding upstream 685052 15824911 ~ 15825237 (-)
G12809 NA non-coding upstream 688907 15828766 ~ 15829026 (-)
AMCG00016293 NA other downstream 345439 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 710118 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 1578224 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 2266848 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 2808375 12323161 ~ 12329033 (-)
AMCG00016327 NA other upstream 1330752 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 1718682 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 1726459 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 2123742 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 2398175 17538034 ~ 17541342 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_04445707_04445922 NA coding CI01000028 null 4445666 ~ 4445922 (-)