AMCG00016792


Basic Information

Item Value
gene id AMCG00016792
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30551128 ~ 30557792 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016792
GCAATTGCTGCTGAGTGgccaaattaaaatgctttgaaaaccaAAAAGGTAATACAATTTCTCTTCACTAAAAccctatatatgtatagatggTGTAAATAACAAGTCGCAAGAGGTCGATCAAGTCGTTTATTGAGCTGTTTGTAgcttgaaagaaagaaaaaatgaatccTGGTCGAAGGTCGTTACTGTTGTTGGCATTTTACATAGCACAAGATGGACAATAACCACAGTCCGTAGTGTTTACAGTCACCTCCTTAATTGAACGCGATTGAAAGGGTGGATGTTTAAATTGGAAAGAAAATCGAGGCGATGTCTGCGTGTTAATGAAATGCTAACTTCACGTTTCCTACTTCCCCCGTCGAAATGAGACTATACTGCCAGAGCTCAGTGGGTGTTGGATGGCACTGCCCACCATGACGATCCTCGAGGGAGTTGGTGATGAAGTGACGGTAGCTGGAGGAGTGGTATTCATGGGCCTGGCGCTGGTGCTGGCCTGGCTCTCTACCTATGTGGCGGACCGGGGTGACCACATTCTGGGCACCATCCTCACGGCCGGTGCCCACGTCTCTCTGGTTAGCATTGGCGGGAGAGACGCTTACATGGGGGGGACCTCTGGCTCAGATTCTACAGAAGCCCAGCCCCCGACCCCCACGGTGGAGGACAAACCCGAGGACGAGGGTGAGACCGGCTCGGAGATCGGCAGTCCCGAGCAGATGCCACAGAGTGAAGGGGCAGCCGACGCTAGCATAGATCACCTCCTGAACATCCAGGGGCTGAGGAAGAGAGCAGCTTCCGATAGTGAGCCCAGCGCCCCGCTGCAGGAGGAGCCCAGTCAGAGCAGCCACTGCGGGGTGGACGTGGAGGACAGACAGATCAAAGTGCGCCTCAAGTTCTTGAATGACACAGAGGAGGTGGCTGTGGTGATGCCTGACGACACCATTGGGCTTCTGAAAAGCAAATACTTCTCGGGCCAGGAGCAGCAGATCAAACTCATATACCAGGGCCAGCTCCTGCAGGACCAGACTCGGACCCTGCTCTCCCTCAACATCACTGATAACAGTGTGATCCACTGTCACGTGTCCCAGGCCACCCGAGAGCCCGTCCCTGACCCCGTGGTGGCGGGAGAGCACGGGGGAGTTGTGCTCAGCATGGGGAACCTAATGATCCCTGTATTTGTGGTAATGCTGGCAATTATCTGGTACTTCCGCATCAACTACCGGCAGTTCTTCACTGCGCCTGCCACTGTGTCCTTGGTGGGCGTGACcgtgtttttcagtttcttggTGTTTGGGATGTACAGCCGGTAAAAGCAAATCAGGGCTGATTGGGGAAGCTGGGTGTTACTGCCATGGTGTGCTTTGGAGGACCTGAAGGGTACAAGAGGAGCTCTTGCACTGACTGttggggtctgtgtgtgtgtgagtgttagtGAGTGTGACTATGATGAGAAGGGAGGTCTGTCAGGGAGAGTTGGGTGGTGGTAAGGTTTTGTAGTGGAAGTCTAACTGGACTTAAGATGCTGAAGAAAAGTGTTATGGATTATTGTCACCGTGTGCATGACATTCAGTAAGGTAAACATCATCATGAACAACACCCTCGTGATAAGAGATGCAGGTTGAGGTTCCTTGTCAGATGTGTCATGACATCTATGGAACACCATCTGTGTGGAAAGACACtttttttcattgtgtattGCATTGTAGCACCCTGTTTTCCAATAATTGTATGATTAAATTCATAAAGACTTAAGGATTTTCTGTGAGATGTATGTCCCAGCAGTATTAGAAGACAGATGACTGGGACATTGTCACACTGTAGATGTGTATGGGCTGGGCTTCAAAACTGAGGTTTGGCTGCAGGCTAGTGCTCTGAGATTCCCCTGACTCTAGGTGGCTTCCATACCTCTGGTACCTCAGACACCGCTCCAGCTGAGCAGAGCACTAACCACATTGTGCTGCACCTCCCTCCTCACAAATCACTCCTTGTCCACACTTGACCTTTATCGTTTCGCCGTATTATTCAAATCTTTGACGGGCGTTTTGATTTTCCCTAATTTAGTTCTGTTTGGATGAGATTTGTGGTGCAGAAATGgaagattgttttgtttagtgttttctttctctctccccacacCAATAACGAATAACCATTTTCAGGTGTAACACAAAAGCACAACTTGCCCATTAGCTGAAGCTGTCACTACTTTCTCGAGTGGACATTATGTAGATTGCAATTAGTGGTGGACTCTGTGAGAAGAGAAAGCCAAGCtcttcctaaaaaaaaaaattacgcACAACAAAGGGCTTGTGGTGCTGCTCCAGTTTCAAGAAAACTGAAGATGGAAAAGTGTTTCAACAGGCTCTGCTGTGAACTTCGCTTGAATAGAAAACTCAGATGGCAAAAGCACTCTGCCATATGTACCACTTGTTGACATGGTAAGATTTTCAGGAGGCGGAAGGCAGCCTCTGTCACATCATGGACAAAAGCATGCGGACCTCTTGAAAGCGATTGAATGAGACTGATGACGCACAAaaacttgaaattaaatgaaagctgATAGGCAAGTTACTTAAAAAGTTGATTCAACAAATGGAGATGTATTGTACATTACCtagtttgtttacttttagGTTACCGGAAAGTATGCAGAAGAGCCCAGACTGATGTAAGCCAAAAAGCAGATTTGGATAACGTAAGCATCTTGAGGAAAGGCTTCTTAAACCTAACAGAAGAAGCTAAAAGTGGGAAGGCTAAAaggattttatttccttgtttttcttattgtttgcTTGGTGGCGTTAACCTCTGTTCCTGCCCATCCACAGTGGAGCATGTTCAAGAATATTTCGGGCAGGACTGAAAAACTAGTTGCCTAGTTgctgcttgcttttttttttttccttaactaCTGTTAAAGACTTGAAGGTCTTTGTGTGCAGTACTCCTTTATAAgttatgaataataaactaGAGGATAATGTCGCTGtgtattaatttgcatttttggtAACCTTGAAACGTGAAATTGATCTCAACATAgtcaatattataattataatagtaagcTTGGAGGAAAGGCGGGTAAAggtaaatggaaaatggaagcTCTGGCTTTGTtctatctttttgttttttaaattcaatatttattttagcctATCAGTGTAACCAGCTTCGAACTGAACCTTTGCTAAATAAAAGTTGTGCTCGGCAGATTTGCTCCTTGTCCAAAGACCTTTTAGTCGTGGCTCTGGCTCAGCTGTTTCAGATATTTCAACTTAAATGGTTTGGCAGAACTCGCAGACctttactttttatgtttgaAAACCATATGCTGCACAGTAACTCATATGGTTTAAACATAAAAAGACCCAGCAGACCACGTAAAAGATGGGAAGTGTAAATAAACTTTGCAAgtgtgacgtggaaaagagaagctatagatcgaaacaagtggaaacatcttggggaggtcttcatccagcaggggattgATTTAGGCAATtgatgatatataaataaatatatatagattgataTCCTCACAGTTTTGTGATCATGAAAAATGCTGCCTCAGACAGACAGTGAATGGGGTTACACGTCATAATTATAGATTCTCTCAAGACGGAGTGCATGAAAATGAATCCAGTGTTTTCGTGTCTCGGCTTGCTAGTGCTTGTGAAAGTGTACAGTTTCTTACAAGGAACTATGTCTTTGTCCTTGGATAGCTGCCTAACCAAAACTTTTCCTATCTGAATAGGAACACATTTCGTAACAGAATGATTTCTGGGATTATCTGAGGAGACATTTCCTTAGCATTATGGCTAGTGACATATATAATTACATCCAAGTTGGGGAACTACCCAAGATTTTCTTTCATGATATACTCATAAAGCTTAGATTGTAATGTGAACTATATTCATTATGCTGAAGATCAGGTTTGTGTCCTTTGCTTCAGGCAGCTTTTGGAAGTAAATATAGCTTTGCATAGTCAGTTTTGGaccattgtttaaaatgatttcttaAATTTGTACTCGACAAGTATGAAATGAAAGGTGCTTTTTGTCTTGGAGGACCCGGACTGCATCATTAGTAGTGCTCTCCGTATGTATAGGGGTCTTTTCTGGGGGGTAGGTAGTAGTATGTCCGTTTCCATAGGTAATAAGTGAAGAAGTCAATGCGTAAACATGACAAAACCAACCTGATTTACACAGAATATAAAGGATGAGATCTACATGACCATTTATTAATAGGATGGCGCACTCTCTATTTCACAATAGACAATGAGGGAAGGTTTATTCTATAGCTATTGGCAGATGTCTACAAACCTTTTCTTATTCCCAATTGCAGTTTCCAAGACTTCCGTGGAGCTGTGGTGACTGatttctgacaaaaaaaaaaactgctccgTTACATTCATCAGATCATTCAGGGGatatggggggtggggaggatcGTTGTACTTTGTGTAAACCACAGAAAAGCTTGAGATTGTAATGCCTGTGGAATGTAGACATGGAAATTGTACCCAACTCTGTTCACACACACCTTTTGTAGGGGAGCTTACACCTCAACTGAAACAATTACATGAATAGTAATTACTACCACCATTTGCGTTTTCCTCTTCTGAACAGGATATGGTATATTTATCAGCTATGTTATTATAATTCTGTCACCAGAGACGCACACTTTGTTGTAGTGAATGATTACTGCTTTTGTACCCAGTGATGGGATCCTTTTGAAGTATTcccaatgaaaacaatattcacaGTACCTACAAGATGAATAAATATACAAGGGTCACTTGGGGCATAACTctataaatatctttaaatattttaagataaaaagTATCTAgcaatttacattaaatctgTTTGAACAGAATATTTTGACACTTTATTGGAATTACTGTGAACTGTTGCAACATCGAGCATTGAAACTCGGTGAACACTTGGTCTAAATAATCAGTAGTTGATAGCTTGAAATTTGGTTCACTTACCTGTCTTAAcccattaaaaaggaaatatcaCCAGCAATAAATAATGATCCTTGTTCCTTGGATTTGCTCAACTGATGTATTCATTCCACAAGCTTTGGGTAGAATTTTTACATCATGATAAAAACTCTTTATCACTTTTTTGTGAGGACAAACAATGTAAATGACCTAAATGATTACCAATATTTCACTGCTGTTCAGGACAAGCCTGTATGTAAATGTACtaactgtatgtactgtatatataaaatataaattggatAAAATTGCATATGGCACTTATGACTGAAATGGGGAACATTAAACTGATTTTTCAATTGA

Function

GO: NA

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016792 True 5323 mRNA 0.42 3 30551128 30557792

Neighbor

gene id symbol gene type direction distance location
AMCG00016794 NA coding downstream 83324 30465157 ~ 30467804 (-)
AMCG00016780 NA coding downstream 309559 30236974 ~ 30241569 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding downstream 327719 30216244 ~ 30223409 (-)
AMCG00016775 NA coding downstream 376840 30161793 ~ 30174288 (-)
AMCG00016773 NA coding downstream 411437 30123851 ~ 30139691 (-)
AMCG00016793 NA coding upstream 464 30558256 ~ 30563594 (-)
AMCG00016801 psmc5,LOC107753303,LOC107745657,LOC106579096 coding upstream 445314 31003106 ~ 31008426 (-)
AMCG00016800 NA coding upstream 454771 31012563 ~ 31015970 (-)
AMCG00016802 LOC105013322 coding upstream 502559 31060351 ~ 31060686 (-)
AMCG00016807 becn1,LOC102786760 coding upstream 619764 31177556 ~ 31183301 (-)
G15746 NA non-coding downstream 119130 30429929 ~ 30431998 (-)
G15716 NA non-coding downstream 314261 30233548 ~ 30236867 (-)
G15711 NA non-coding downstream 342591 30207687 ~ 30208537 (-)
G15708 NA non-coding downstream 346013 30204822 ~ 30205115 (-)
G15690 NA non-coding downstream 437844 30109453 ~ 30113284 (-)
G15845 NA non-coding upstream 440842 30998634 ~ 31002128 (-)
G15854 NA non-coding upstream 475278 31033070 ~ 31033320 (-)
G15864 NA non-coding upstream 545587 31103379 ~ 31106792 (-)
G15890 NA non-coding upstream 614393 31172185 ~ 31176602 (-)
G15927 NA non-coding upstream 812288 31370080 ~ 31379449 (-)
G15787 NA other downstream 21628 30526292 ~ 30529500 (-)
G15706 NA other downstream 348777 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 1325541 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1765621 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 2393928 28130012 ~ 28157200 (-)
AMCG00016815 NA other upstream 822755 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 1703757 32261549 ~ 32267968 (-)
G16247 NA other upstream 1865266 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 1939715 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 2618284 33176076 ~ 33178883 (-)

Expression


Co-expression Network