RNA id: AMCG00016792


Basic Information

Item Value
RNA id AMCG00016792
length 5323
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00016792
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30551128 ~ 30557792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAATTGCTGCTGAGTGgccaaattaaaatgctttgaaaaccaAAAAGGTAATACAATTTCTCTTCACTAAAAccctatatatgtatagatggTGTAAATAACAAGTCGCAAGAGGTCGATCAAGTCGTTTATTGAGCTGTTTGTAgcttgaaagaaagaaaaaatgaatccTGGTCGAAGGTCGTTACTGTTGTTGGCATTTTACATAGCACAAGATGGACAATAACCACAGTCCGTAGTGTTTACAGTCACCTCCTTAATTGAACGCGATTGAAAGGGTGGATGTTTAAATTGGAAAGAAAATCGAGGCGATGTCTGCGTGTTAATGAAATGCTAACTTCACGTTTCCTACTTCCCCCGTCGAAATGAGACTATACTGCCAGAGCTCAGTGGGTGTTGGATGGCACTGCCCACCATGACGATCCTCGAGGGAGTTGGTGATGAAGTGACGGTAGCTGGAGGAGTGGTATTCATGGGCCTGGCGCTGGTGCTGGCCTGGCTCTCTACCTATGTGGCGGACCGGGGTGACCACATTCTGGGCACCATCCTCACGGCCGGTGCCCACGTCTCTCTGGTTAGCATTGGCGGGAGAGACGCTTACATGGGGGGGACCTCTGGCTCAGATTCTACAGAAGCCCAGCCCCCGACCCCCACGGTGGAGGACAAACCCGAGGACGAGGGTGAGACCGGCTCGGAGATCGGCAGTCCCGAGCAGATGCCACAGAGTGAAGGGGCAGCCGACGCTAGCATAGATCACCTCCTGAACATCCAGGGGCTGAGGAAGAGAGCAGCTTCCGATAGTGAGCCCAGCGCCCCGCTGCAGGAGGAGCCCAGTCAGAGCAGCCACTGCGGGGTGGACGTGGAGGACAGACAGATCAAAGTGCGCCTCAAGTTCTTGAATGACACAGAGGAGGTGGCTGTGGTGATGCCTGACGACACCATTGGGCTTCTGAAAAGCAAATACTTCTCGGGCCAGGAGCAGCAGATCAAACTCATATACCAGGGCCAGCTCCTGCAGGACCAGACTCGGACCCTGCTCTCCCTCAACATCACTGATAACAGTGTGATCCACTGTCACGTGTCCCAGGCCACCCGAGAGCCCGTCCCTGACCCCGTGGTGGCGGGAGAGCACGGGGGAGTTGTGCTCAGCATGGGGAACCTAATGATCCCTGTATTTGTGGTAATGCTGGCAATTATCTGGTACTTCCGCATCAACTACCGGCAGTTCTTCACTGCGCCTGCCACTGTGTCCTTGGTGGGCGTGACcgtgtttttcagtttcttggTGTTTGGGATGTACAGCCGGTAAAAGCAAATCAGGGCTGATTGGGGAAGCTGGGTGTTACTGCCATGGTGTGCTTTGGAGGACCTGAAGGGTACAAGAGGAGCTCTTGCACTGACTGttggggtctgtgtgtgtgtgagtgttagtGAGTGTGACTATGATGAGAAGGGAGGTCTGTCAGGGAGAGTTGGGTGGTGGTAAGGTTTTGTAGTGGAAGTCTAACTGGACTTAAGATGCTGAAGAAAAGTGTTATGGATTATTGTCACCGTGTGCATGACATTCAGTAAGGTAAACATCATCATGAACAACACCCTCGTGATAAGAGATGCAGGTTGAGGTTCCTTGTCAGATGTGTCATGACATCTATGGAACACCATCTGTGTGGAAAGACACtttttttcattgtgtattGCATTGTAGCACCCTGTTTTCCAATAATTGTATGATTAAATTCATAAAGACTTAAGGATTTTCTGTGAGATGTATGTCCCAGCAGTATTAGAAGACAGATGACTGGGACATTGTCACACTGTAGATGTGTATGGGCTGGGCTTCAAAACTGAGGTTTGGCTGCAGGCTAGTGCTCTGAGATTCCCCTGACTCTAGGTGGCTTCCATACCTCTGGTACCTCAGACACCGCTCCAGCTGAGCAGAGCACTAACCACATTGTGCTGCACCTCCCTCCTCACAAATCACTCCTTGTCCACACTTGACCTTTATCGTTTCGCCGTATTATTCAAATCTTTGACGGGCGTTTTGATTTTCCCTAATTTAGTTCTGTTTGGATGAGATTTGTGGTGCAGAAATGgaagattgttttgtttagtgttttctttctctctccccacacCAATAACGAATAACCATTTTCAGGTGTAACACAAAAGCACAACTTGCCCATTAGCTGAAGCTGTCACTACTTTCTCGAGTGGACATTATGTAGATTGCAATTAGTGGTGGACTCTGTGAGAAGAGAAAGCCAAGCtcttcctaaaaaaaaaaattacgcACAACAAAGGGCTTGTGGTGCTGCTCCAGTTTCAAGAAAACTGAAGATGGAAAAGTGTTTCAACAGGCTCTGCTGTGAACTTCGCTTGAATAGAAAACTCAGATGGCAAAAGCACTCTGCCATATGTACCACTTGTTGACATGGTAAGATTTTCAGGAGGCGGAAGGCAGCCTCTGTCACATCATGGACAAAAGCATGCGGACCTCTTGAAAGCGATTGAATGAGACTGATGACGCACAAaaacttgaaattaaatgaaagctgATAGGCAAGTTACTTAAAAAGTTGATTCAACAAATGGAGATGTATTGTACATTACCtagtttgtttacttttagGTTACCGGAAAGTATGCAGAAGAGCCCAGACTGATGTAAGCCAAAAAGCAGATTTGGATAACGTAAGCATCTTGAGGAAAGGCTTCTTAAACCTAACAGAAGAAGCTAAAAGTGGGAAGGCTAAAaggattttatttccttgtttttcttattgtttgcTTGGTGGCGTTAACCTCTGTTCCTGCCCATCCACAGTGGAGCATGTTCAAGAATATTTCGGGCAGGACTGAAAAACTAGTTGCCTAGTTgctgcttgcttttttttttttccttaactaCTGTTAAAGACTTGAAGGTCTTTGTGTGCAGTACTCCTTTATAAgttatgaataataaactaGAGGATAATGTCGCTGtgtattaatttgcatttttggtAACCTTGAAACGTGAAATTGATCTCAACATAgtcaatattataattataatagtaagcTTGGAGGAAAGGCGGGTAAAggtaaatggaaaatggaagcTCTGGCTTTGTtctatctttttgttttttaaattcaatatttattttagcctATCAGTGTAACCAGCTTCGAACTGAACCTTTGCTAAATAAAAGTTGTGCTCGGCAGATTTGCTCCTTGTCCAAAGACCTTTTAGTCGTGGCTCTGGCTCAGCTGTTTCAGATATTTCAACTTAAATGGTTTGGCAGAACTCGCAGACctttactttttatgtttgaAAACCATATGCTGCACAGTAACTCATATGGTTTAAACATAAAAAGACCCAGCAGACCACGTAAAAGATGGGAAGTGTAAATAAACTTTGCAAgtgtgacgtggaaaagagaagctatagatcgaaacaagtggaaacatcttggggaggtcttcatccagcaggggattgATTTAGGCAATtgatgatatataaataaatatatatagattgataTCCTCACAGTTTTGTGATCATGAAAAATGCTGCCTCAGACAGACAGTGAATGGGGTTACACGTCATAATTATAGATTCTCTCAAGACGGAGTGCATGAAAATGAATCCAGTGTTTTCGTGTCTCGGCTTGCTAGTGCTTGTGAAAGTGTACAGTTTCTTACAAGGAACTATGTCTTTGTCCTTGGATAGCTGCCTAACCAAAACTTTTCCTATCTGAATAGGAACACATTTCGTAACAGAATGATTTCTGGGATTATCTGAGGAGACATTTCCTTAGCATTATGGCTAGTGACATATATAATTACATCCAAGTTGGGGAACTACCCAAGATTTTCTTTCATGATATACTCATAAAGCTTAGATTGTAATGTGAACTATATTCATTATGCTGAAGATCAGGTTTGTGTCCTTTGCTTCAGGCAGCTTTTGGAAGTAAATATAGCTTTGCATAGTCAGTTTTGGaccattgtttaaaatgatttcttaAATTTGTACTCGACAAGTATGAAATGAAAGGTGCTTTTTGTCTTGGAGGACCCGGACTGCATCATTAGTAGTGCTCTCCGTATGTATAGGGGTCTTTTCTGGGGGGTAGGTAGTAGTATGTCCGTTTCCATAGGTAATAAGTGAAGAAGTCAATGCGTAAACATGACAAAACCAACCTGATTTACACAGAATATAAAGGATGAGATCTACATGACCATTTATTAATAGGATGGCGCACTCTCTATTTCACAATAGACAATGAGGGAAGGTTTATTCTATAGCTATTGGCAGATGTCTACAAACCTTTTCTTATTCCCAATTGCAGTTTCCAAGACTTCCGTGGAGCTGTGGTGACTGatttctgacaaaaaaaaaaactgctccgTTACATTCATCAGATCATTCAGGGGatatggggggtggggaggatcGTTGTACTTTGTGTAAACCACAGAAAAGCTTGAGATTGTAATGCCTGTGGAATGTAGACATGGAAATTGTACCCAACTCTGTTCACACACACCTTTTGTAGGGGAGCTTACACCTCAACTGAAACAATTACATGAATAGTAATTACTACCACCATTTGCGTTTTCCTCTTCTGAACAGGATATGGTATATTTATCAGCTATGTTATTATAATTCTGTCACCAGAGACGCACACTTTGTTGTAGTGAATGATTACTGCTTTTGTACCCAGTGATGGGATCCTTTTGAAGTATTcccaatgaaaacaatattcacaGTACCTACAAGATGAATAAATATACAAGGGTCACTTGGGGCATAACTctataaatatctttaaatattttaagataaaaagTATCTAgcaatttacattaaatctgTTTGAACAGAATATTTTGACACTTTATTGGAATTACTGTGAACTGTTGCAACATCGAGCATTGAAACTCGGTGAACACTTGGTCTAAATAATCAGTAGTTGATAGCTTGAAATTTGGTTCACTTACCTGTCTTAAcccattaaaaaggaaatatcaCCAGCAATAAATAATGATCCTTGTTCCTTGGATTTGCTCAACTGATGTATTCATTCCACAAGCTTTGGGTAGAATTTTTACATCATGATAAAAACTCTTTATCACTTTTTTGTGAGGACAAACAATGTAAATGACCTAAATGATTACCAATATTTCACTGCTGTTCAGGACAAGCCTGTATGTAAATGTACtaactgtatgtactgtatatataaaatataaattggatAAAATTGCATATGGCACTTATGACTGAAATGGGGAACATTAAACTGATTTTTCAATTGA

Function

GO: NA

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19567 lncRNA downstream 119130 30429929 ~ 30431998 (-) True G15746
TU19535 lncRNA downstream 314261 30233548 ~ 30236867 (-) True G15716
TU19527 lncRNA downstream 342591 30207687 ~ 30208537 (-) True G15711
TU19524 lncRNA downstream 346013 30204822 ~ 30205115 (-) True G15708
TU19499 lncRNA downstream 437844 30109453 ~ 30113284 (-) True G15690
TU19678 lncRNA upstream 440842 30998634 ~ 31002128 (-) True G15845
TU19687 lncRNA upstream 475278 31033070 ~ 31033320 (-) True G15854
TU19697 lncRNA upstream 545587 31103379 ~ 31106792 (-) True G15864
TU19730 lncRNA upstream 614393 31172185 ~ 31176602 (-) True G15890
TU19778 lncRNA upstream 812288 31370080 ~ 31379449 (-) True G15927
AMCG00016794 mRNA downstream 83324 30465157 ~ 30467804 (-) True AMCG00016794
AMCG00016780 mRNA downstream 309559 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016779 mRNA downstream 327719 30216244 ~ 30223409 (-) True AMCG00016779
AMCG00016775 mRNA downstream 376840 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016773 mRNA downstream 411437 30123851 ~ 30139691 (-) True AMCG00016773
AMCG00016793 mRNA upstream 464 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016801 mRNA upstream 445314 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016800 mRNA upstream 454771 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016802 mRNA upstream 502559 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016807 mRNA upstream 619764 31177556 ~ 31183301 (-) True AMCG00016807
TU19613 other downstream 21628 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 348777 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 1765621 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3122477 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3147206 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1865266 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1939715 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1939715 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2618284 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2868696 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile