RNA id: TU19730


Basic Information

Item Value
RNA id TU19730
length 3340
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G15890
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31172185 ~ 31176602 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacagaCAGCCTGCATTACAGTCCCAGACTGAAAAGTGCAGGCTTGAGCTGGAAACACTCAAATACTATCCCAGAATGAACAAAATCCTTTCAGACAACACAGCCACCACCTGAGCAATACACAGAGTCACCACCAGGAGCCAGCGCTGAGGCACTTTGGAATAGAGAAATCCCAAACAAACCGCAGTTGCTCCGTTAATCGGTTCCAGACCTACTGTACTCTTCCTCACTCTTACCACTGGAAACTAAACATACTGCTTCACTCCAACAGATTCCTTTCAATTTCATTCTTCTTCCgaaagttaaaaatatgtaatgtgtttacaggaaaataaattctgatattaaaaagaaagaaaaaaatccaatcTTCAAATTTTCCATTGACCACAATGCTATTGCATCACCTCATGAATAATGGGAAAATACCAAAATCTCTCTTTAAAGACATCTACAGAAGTAAAaCATGGTGGCTTTCTTTGGCTGTCATTTGTTGTTGACCGGGACAACGATATTGCACTGCTCCAGAATACACCATGATTTGTGGGTGGGAATCCTTCATTTTCTACGCAGATTCTCAAGATTCTATCGGAAATGTACAGATGAcgacaacaacacacaaatgaaatgcaaattaaatattaaaaagccaAACCTAATGGTAAATCCTTGCGTGAAACCTGTGCTTATAAAAAGCTACAATACTTTGCATGCACTTTACAGTATAGcaaaaaaagaatagaaaaaaaagctaCAATACTTTGGATTTGGTTCCTCATTGCCCAACGGCCCTCagttagagagaaaaaaaactgaaaatgtacttGTCCTTGTAATCTGTTCCGAGAAACAATGGCACTTATCTTTAGTTCGACATAAACAGtcaaagtatttttcttattttttcattcagaaaaaataaatttaaagtTCCTtgtatccatccattttcaaaaccacttatcctggcaaggggaagccagagctgatcccagcaggcatatgGCACAAGGCAGGAGTACACCCAGGATggggcaacacacacagggcaatttagagagaccatggggagaacatgcaaactccacacagacaggtccCCCCAAGCCAGCATTTGAACCcaggaccctggagctgtgaggcagtaGTGCTAACCACCGTACCACCCTTCTTTGTATCTATTATGCCAAAATGCTTTCATCACAGACATTTTCATAATGATTACAATGTTTCTTGGAATCAAGCATCTGTCAGAATGTACCTAACAAAAAGGCCATGGCAGAAAACCCCGGCCATCCATGTTCAAGAACACAATGCTATAGCAGCTATGTTGGTTTACGGAGACTCCAACTATGAAAAGGGAATGATGAATTCAGCATCTCCAGATTTTGGAAGCTTAGTTTTTCAAAGGGTTTATTGTAAGGTGTAACAGACACCAACCTGGGCTGTTGTTTTGTAACCACTTGTAAAAGACCTTGAGGTGAACCTGTTTACTTGCTCATGCCTGCATTGAATGGGTAGAGTGTTCTCATTAATAAGACAATGTCAGCCCCCTGGACCTTCTGACGTTTCCACAACACTACAACCAAGCACAGTGAATCCCTCAAAACAGAATTATACCCCCAACACACAAGCAGCCTTTGTTTACTTTAGACTTGTAGTGTCATACAAAGCTGTTCAAAAATTCAATCTGAACCTTAGCTTTCTGTATGTGTGGTTCTGCCTTTAGCTATAAAGTTGAATGTCTACagtaaaaaaaaggaaaataaggaTTATCATACTTCtgatttctttttcaaatgcatttgcttataCAAAGCGgtctttctttttagtttttcatcgTGTTGAGTTCCCGTGGCGAACACTTCCACAGACTCACTGAAACTCAAACCCTAACATCAAAGGAAAACCAcagtcctttttcttttctccttctcAGCTTTTCTACTATGACCAATAAATCAAGAATGCAATTAAATTGTTGTGCTTTCACCCTCCggaagggggggaggggcaAATGTTAGAGAGGTCTCAAACTAACAGACTAACACAGTCAACGCATTTGTTTGACACAAACAGCATGTGAACTGCATTCTGAGTACCCAGGGTGgagttctgtcttttttttacaaaaccaaAGACCACCCAACAGAACGAAAATAAAGGATACATAGGCCTGGAATAATGCTTTGTAACTTTTACAGTTACCATTCTGCTCTAGTTTAAAGACAGCACAGGATTAAAACAGGATTATATTGCTATTTGCCTTCCCTAATCCACATTTGTGTCTGCTGAATTCCCTCTGAGCTGCACAAGCCCATATAGTTTGTCTGTGGAGCTGCACGATGAATTTGCCATGTTTTTCAAACACTAGAACATTCTTTAGCATGCTTCTCAAATTCCATACAGAATTACAGAATAAATCTCTCCCCTGGGGTCAATGAATCCATGTTTGAACCTCAGGACATGAGCAAAGCGTTTACTGCACTACAGCCGACGGCACTGACAGCCCATGATTCCCCATCCGATCATGACAATGGTCACTACCCAGGCGCAGTCAGGAATAAAATCAATGAGTATGAAGGTTTGGGATTTTTACACAATCGATCCTGGCGGGGGGGCCCCCCATGAGATACTTCAACCTCAGCAGAATGTAAATCGTGAAAGCTGTGACCAAAGAATACCTTTTGCAAACAGAAGACAGCACAAGGAAAGTCAGGTTTAAAAACGTAAGTCTCTATAGTCTCTGACTGTTCATCAAAATGCATCGATTCTGTATTTCGATAAGCAagtataacaatatatattgcaatgaggcaggaagaaaaaaaaaaaaacatatactgctcatatattttgttatacttGTTATTCAACTTGAGCTACGCGTCATCAAATAATGAAGCTTAAGAAAAGGACAAGGGGGTACAAGGAGATAATGTTGTCTTGCAGATAAAGGGGGAGTCTTCTTTCCTCCTGTTTCTCACAGGTGTCGGCCCTGGTTTCCATGCTGCTTGGCTATGGGTGAGTCACTTGGTTTTCCGCTGTGCTCCACACAGCCCCAGAGCATCTTCAAACACCCGTCAGTccgtcagtctgtcagtcagtctgtctgtctgtgtcagtctgtcCATCCCGTCTCGTCCCGTTACTCTGGCTGCTCGTTCATCTCCATGTCAGACACCAGGATGTTTTTCTCGGCGGACTCCGTGGGGGCGGAGTTGGTGCGGCTGTAGCGTGCCCCCTCGAAGGCCCCCCGTGCCCCACCGCTCCGCCTCCTGTACAGGAAGATGGCGGCCATGATGAAGAGGCACAGGGCCACAGCGGTCACGATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19697 lncRNA downstream 65393 31103379 ~ 31106792 (-) True G15864
TU19687 lncRNA downstream 138865 31033070 ~ 31033320 (-) True G15854
TU19678 lncRNA downstream 170057 30998634 ~ 31002128 (-) True G15845
TU19567 lncRNA downstream 740187 30429929 ~ 30431998 (-) True G15746
TU19535 lncRNA downstream 935318 30233548 ~ 30236867 (-) True G15716
TU19778 lncRNA upstream 193478 31370080 ~ 31379449 (-) True G15927
TU19783 lncRNA upstream 203945 31380547 ~ 31383730 (-) False AMCG00016815
TU19800 lncRNA upstream 244142 31420744 ~ 31421968 (-) True G15947
TU19815 lncRNA upstream 300241 31476843 ~ 31481401 (-) True G15962
TU19842 lncRNA upstream 312659 31489261 ~ 31489836 (-) True G15976
AMCG00016802 mRNA downstream 111499 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016800 mRNA downstream 156215 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016801 mRNA downstream 163759 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016793 mRNA downstream 608591 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016792 mRNA downstream 614393 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016807 mRNA upstream 954 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016812 mRNA upstream 115680 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016811 mRNA upstream 159843 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016815 mRNA upstream 204044 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016816 mRNA upstream 224215 31400817 ~ 31403944 (-) True AMCG00016816
TU19613 other downstream 642685 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 969834 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2386678 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3743534 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3768263 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1246456 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1320905 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1320905 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1999474 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2249886 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046881 True 2789 lncRNA 0.43 4 NC_007135.7 38602017 ~ 38609746 (-)
striped catfish (Pangasianodon hypophthalmus) TU352043 True 1059 lncRNA 0.44 3 NC_047613.1 17233977 ~ 17236111 (-)