RNA id: AMCG00016812


Basic Information

Item Value
RNA id AMCG00016812
length 660
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00016812
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31292282 ~ 31315388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAGACTCCAGGCCCAGAGGGAATGTGAAATTAGTATCCCACGCTCCCAAGGTTCCTCATACTACGACAACGTTCGTCCCTTAGCTTACCCAGACTCTGATGCCGTGCTCATCTGCTTCGACATCAGTCGCCCAGAAACTCTGGACAGCGTCCTCAAAAAGTGCTCAATGCGGTTCTCCGTGACCTTTGACTCACACTGCCCCAGGGTTGCTGGCATGAGTGGCAGTCAAGAGTACCTTGCAGTTTCACTCAAACTTTTTCTTGTTCTGCAGTGGCAGGGGGAAACACAGGAGTTCTGCCCCAATGCGAAGGTTGTGCTGGTGGGGTGTAAACTGGACATGAGGACAGATCTGAACACACTGCGTGAGCTCTCCAAACAGAGACTAATACCAGTCACACATGAGCAGGGAAGCACACTGGCGAGACAGATCGGAGCCGTGGCGTACGTCGAGTGCACCTCAAAAGTGTCTGAGAACAGCGTGCGAGATGTCTTCCACATCACCACCCTGGCCTCTGTCAACAGGATACACAAAACCCTGAAACGCAGCAACTCCAAGCGAGGACTGAAGCGCGTTTCGCAGTTGCCTGGACGGACTGAATTGTTGGACAACACAGAAATGCGGAAGGACCGTGCGAAGAGCTGCTCCATCATGTAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19730 lncRNA downstream 115680 31172185 ~ 31176602 (-) True G15890
TU19697 lncRNA downstream 185490 31103379 ~ 31106792 (-) True G15864
TU19687 lncRNA downstream 258962 31033070 ~ 31033320 (-) True G15854
TU19678 lncRNA downstream 290154 30998634 ~ 31002128 (-) True G15845
TU19567 lncRNA downstream 860284 30429929 ~ 30431998 (-) True G15746
TU19778 lncRNA upstream 54692 31370080 ~ 31379449 (-) True G15927
TU19783 lncRNA upstream 65159 31380547 ~ 31383730 (-) False AMCG00016815
TU19800 lncRNA upstream 105356 31420744 ~ 31421968 (-) True G15947
TU19815 lncRNA upstream 161455 31476843 ~ 31481401 (-) True G15962
TU19842 lncRNA upstream 173873 31489261 ~ 31489836 (-) True G15976
AMCG00016807 mRNA downstream 108981 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016802 mRNA downstream 231596 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016800 mRNA downstream 276312 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016801 mRNA downstream 283856 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016793 mRNA downstream 728688 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016811 mRNA upstream 21057 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016815 mRNA upstream 65258 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016816 mRNA upstream 85429 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016823 mRNA upstream 328468 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016824 mRNA upstream 342860 31658248 ~ 31674496 (-) True AMCG00016824
TU19613 other downstream 762782 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1089931 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2506775 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3863631 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3888360 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1107670 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1182119 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1182119 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1860688 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2111100 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile