AMCG00016862


Basic Information

Item Value
gene id AMCG00016862
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32584019 ~ 32590534 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016862
ATGAGTTTTGAGTGGCCTTGGCAGTATAACTTCCCTCCCTTCTTTACGTTACAGCCTAATGTTGACACCCGGCAGAAACAGCTGACTGCATGGTGCTCGTTGGCGCTGTCGTTTTGTCGGCATAACAAACTCTACACACTGGACATAATGGAAGCCCAGGAGAGCCCGATTTCAGGGAAGCTCTCCACAGAAGCCATTCAGGTTTCCAAAAACGGAATGACAAACTCTGTGTTCACACTATTTGAGCTGTCTAATGGAGACGATACAGAGAGCGAAGAGTTCCACGGGCTGGAGGAGTGGATGTTGCTGCGGTCCCTGCAGGCGCTTCAGACAGATGGCAAGGCCGAGATCATCACTATGAATGATGGGAAAGGAGTGAAGTTCTTCTGAGGAGAGCACTGCTGTGACAGGGTGGACTGTGAGCTGGGGCCACGCTGGATAGATGTCGGTCTGATATGATGTGTCCGTTTCTGGAACTAAAGAGTCAATTGTGTCTTCCGTCAAAGGAACAAGGGAAACGCGTGCTCCCTAATTGTTTGTAATCTAGactgatgcaaaatatttaaggAAAGTCCCCTGACCTTTGTTTGGGGGCCGATTTTGATTagataaaaaaaggaataaaggaaaatgtaaagcatGCCTTCCCAGATGAGATCTCTCTACTCttcttttccaaaatgtttttaccagcgtttttattattattattattattttattttgtttactttatttaatgaCCTTCAGAAGATATAATGTGTTGGGTCTCTGAGCTCACATCAAGCATTTCTGGTCAGCTGCagaaaagtctctctctctcctgaagcGTGTGGTGGATATATACAATTCTTACTGGAAAATACTTGGTTTTGGTACTgggagcatttttttttttctctggtaAGAGCATGGACAAGGGGTTTAGCTACTGTAGATTGTGCTGGATTTTCCTGTTAGGATGTTTTAGccatgtctttttctttgtattcCACCCCCTTTTACATTGAGGgtgaactgtaaaataaatagaaattaaatgaaaaacagatgtgtgtgttcCTTCTGC

Function

GO: NA

KEGG:

id description
K12189 VPS25, EAP20; ESCRT-II complex subunit VPS25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016862 True 1069 mRNA 0.43 5 32584019 32590534

Neighbor

gene id symbol gene type direction distance location
AMCG00016857 wnk4,LOC108257086,LOC108429078,LOC105912834 coding downstream 37205 32545619 ~ 32546814 (-)
AMCG00016858 wnk4b,LOC107754305,LOC107582920,LOC107585056,LOC107740640,LOC107683678,LOC108429078 coding downstream 50260 32508349 ~ 32533759 (-)
AMCG00016860 NA coding downstream 113912 32469895 ~ 32470107 (-)
AMCG00016856 NA coding downstream 114393 32438236 ~ 32469626 (-)
AMCG00016850 NA coding downstream 200824 32382683 ~ 32383195 (-)
AMCG00016864 NA coding upstream 83783 32674317 ~ 32692351 (-)
AMCG00016867 NA coding upstream 272712 32863246 ~ 32871525 (-)
AMCG00016868 NA coding upstream 330471 32921005 ~ 32922249 (-)
AMCG00016871 NA coding upstream 331895 32922429 ~ 32924404 (-)
AMCG00016870 NA coding upstream 336497 32927031 ~ 32930813 (-)
G16250 NA non-coding downstream 147336 32434236 ~ 32436683 (-)
G16249 NA non-coding downstream 155939 32427852 ~ 32428080 (-)
G16248 NA non-coding downstream 158063 32425716 ~ 32425956 (-)
G16245 NA non-coding downstream 167575 32416191 ~ 32416444 (-)
G16244 NA non-coding downstream 190639 32393142 ~ 32393380 (-)
G16292 NA non-coding upstream 264247 32854781 ~ 32857465 (-)
G16293 NA non-coding upstream 268707 32859241 ~ 32861597 (-)
G16325 NA non-coding upstream 393720 32984254 ~ 32984464 (-)
G16375 NA non-coding upstream 665119 33255653 ~ 33256382 (-)
G16377 NA non-coding upstream 693480 33284014 ~ 33284227 (-)
AMCG00016859 NA other downstream 76700 32497507 ~ 32507319 (-)
G16247 NA other downstream 160581 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 316051 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1195751 31380547 ~ 31388268 (-)
G15787 NA other downstream 2054519 30526292 ~ 30529500 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 585542 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 801255 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 898191 33488725 ~ 33513579 (-)
G16563 NA other upstream 1516156 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2805458 35395992 ~ 35399030 (-)

Expression


Co-expression Network