AMCG00016884 (ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963)


Basic Information

Item Value
gene id AMCG00016884
gene name ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33307741 ~ 33318582 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016884
CACCTTGCGTCATGAATAAGTAATGAACGTCTGCCATCTGACGCAACCCCCACGCAGAGATTCCGCAGCCGGTGCGAAGGGCAGTTTGGACGGGATACGAGTCGTGTTTTTACTGCGTGAGAATCGTGCGATTGACTCCTCCAgtggaggaaaaagaaaagcacaataaaGAAACAACGATACACGCAAGCTTCTGAAAAGACGCAGGGAGTTTGCAGGAAAGCCAGTTATTCATGATGACTGCATGGTGTAGAGTTGTGCGCATTCAACTTCCAGGATCTAAATTTTCTGCCATGAGGACGCTGGCTGTGTTGcccctgctcctgctgctgctgctgccgcccgTGTCGTGGGCGCGCTTCGACGAGTTTGACGACGGCGAGGAACTGGCAGAGTTCGACGACAACGACTTTGCCGAATTCGAGGACGTGAGCGAGGACCCTCCTACCGAGGCACCCCCACGCACCGTGACGGCCCAGGACGATGAGGATGAAGCCACTGTGGAGCTGGAGGAAAATCAGGATGACTTTGAGGACTCCGAGACACCGGATGAAGACGTCTACAAATACGATGCCGAGGAATTTGAAGGTTTTGAGAAGCCCCCTCCATCTTTTAAGGATCCCATCAACTACATCGATGTTCCACCTCACCTGCAGAACAGCTGGGAGAGCTACTACATGGAGATCCTCATGGTGACGGGTCTGCTGGCCTATATCATGAACTATATCATCggcaagaacaagaacaacCGGCTGGCGCAGGCCTGGTTCAACTCCCACAGAGAGCTGCTGGAGAGTAACTTTGCCCTTGTGGGTGATGATGGCACCAGTAAAGACGCAGTGAGCACGGGCAAGCTGAACCAGGAGAACGAGCACATCTACAACCTGTGGTGCTCCGGCCGGGTGTGCTGCGAGGGCATGCTCATCCAGCTCAAGTTTCTGAAGAGGCAGGACCTGCTGAACGTGCTGGCGAGGATGATGAGGCCGGCCGGCGATCAAGTGCAAATCAAAGTCACCCTGGTCGATGAAGACATGGATACGTTTGTGTTTGCCGTGGGGACGAAGAAGGCCATGGCTCGGATGCAGAAAGACATGCAGGACTTGAGCGAGTTCTGCAACGACAAACCCAAATCAGGAGCCAAGTATGGGTTGCCAGAGTATCTGGCCATTCTATCTGAGATGGGAGAGGTGACTGAGGGAGTTATGGACAATAAGaTGGTACATTTCCTCACCAATCACGCCGACAAAATCGAGTCCATCCATTTCTCGGACCAATTCTCTGGTCCAAAACTTATGCAAGAGGAGGGACAGCCCTTGAAGCTGCCCGAGACGAAGAAGACGCTTTTGTTTACATTCAAtgTGCCTGGCATGGGCAACACGTCGCCCAAAGACATGGAGTCCCTGCTGCCCCTGATGAACATGGTGATCTACAGCATCGACAAGGTCAAGAAATTCCGCCTCAACAGGGAGGGCAAGCAGAAGGCCGATAAGAACCGTGCGCGCGTGGAGGAGAACTTCCTGAAGCTGACGCACGCCCAGCGGCAGGAGGCGGCCCAGACCCGGCGCGAGGAGAAGAAGCGAGCCGAGAAGGAGAGGATCATGAACGAAGAGGACCCGGACAGACAGCGCCGCCTGGAGGAGGCTGCGCAGCGTCGGGAGCAGAAGAAGATGGAGAAGAAGCAGATGAAGATGAAGCAGATCAAAGTGAAAGCCATGTGAAGAGCTGCATTCCTGTGAGCTCCTGACAGACAGCACAACACCCCCCCTTCCCATACCTACAGCCCCTCTGCCTCCCCAGCACACACTGTCCTGGCAGGCCCAGGTGCCTCTGTCACCTCTGGCCGGTATTAAGATGGGTGTCCCTTAACCTACCGTGGTCGCGTGTATATGTGAACCCAGGTAGAACCAACCCCAGAGAAGAAGTACAAGTGGTGCATTTGGTCGTAGTTGATAGGGTTTCGGATGATCTCTTATGGCCTGTGCTTTCAATTGTACACATTCTTTTCGGCGTTTTTGTTTTAGCTTATTgatagtttttgtatttttttctaccATCTCGCTTTTAAATTGGATTGGATGTTCTGTGCAAAATAATGAACTGGATTGAAAATATCCTTGAACACTTTTTTAACCTGTACGTGGGTGTCTCGAACACCCAACTGAAGTTTCCCTTTTAAGAGATCAGTACTTTAAATGATGTAATAAAAATTGATAAATCTGCTAAATCACTTCAACTTTTctgaacaatttgtttttatcatcacAAATATGGCCTGGGTTTGGATGTCGGTATTATAAACACTACCTTATACACTGCAGAAGCATTAATGAGGTTTGGATTACAATTGGCAGGAAGTAATCAAGTCATGCTTGTTCTGAAGGGTTTGGAAATCCCTGCATATACACAACGGTACGGGCAGTTAATGTGAGGAACCATCTTAATAGCGGCCAGTGAGAATCAAGAGCAAAAGAAACTCCTTGATTTATGTTGTTTGACCAGCCTCTCGGTGTCTCTGTGGATTTCAGCCTGGGGAGGGGAGAGGCGCTGGCTGACAGTGCGCACCGGTCTCTGAGAGGCTGCTCTTTCTGCGATTTCTGTTCACACCCCCTGTGAGATCTGGCCCCAAGACTGTGCCACTTGGAAACCCCACATGGGACAACTTGTCAAGGATGTAGCCTCATGTGAAAAGGAACAGTTGGTAGTCTTCCTGAGCAAGGTGGCTCACTCCAGACTCCACACGGGCACCTTCTGATGTAGTCGGTACCGATTAGTCTTCTAACCTTGAATGCTGTTGGCTTGGTCCAGAATGTCAAGAGAGTTGTTCAATCATTGTAGTTTTCCCTCCTGAGATGCGTCTTAttttatccccccccaccccagtacGAGATTGGCAGCAAATGTTCCGAAATCTTTTTCTGCATGATGTTATACAGCTTGGCTTTTCTAATTCCAAGGTATTTGTTTAACAAAGAAGTGGTGACCAAAGCGAGATCAGATTCATTTTCCATTGTCTGTCTTTTGCCACAAGTAAACGGAGGATCTTCTTGAACTTGCAAGCTGCTGGTGAAGTGTGTCAGTACGTGGCTGTGGGTGGGTTGGTGGTTTCGGTTGGGGTATGTGTTGCACAGTGGCTGGTGTGGGCAGTTTGAGGCAGGTATTTAAAATGGATGCTGGAGCGGGACTGTGTGCAGAGTGGGGAGGGGCTCCTTCGTGGCTCTGGGACTGGACTGGGACTGCTGTGCTTCTGCTCACTGATGTTGTCTGGAAGAGCAATCaagacatttactgttttttgttgtctgctgtttctcttttcattttttttattttttattttcattctgggCCTCCTGGTCAGTGAGTGCTGGTACAGTGACACTGGGGAGGCAGGCCTGGGAGAATGCAGCTATTTGAATAAATCAGGGAGGGGTCTTCTAAACCACACCACGG

Function

symbol description
ccdc47 Predicted to enable calcium ion binding activity. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).

NR:

description
PREDICTED: coiled-coil domain-containing protein 47

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24962 CCDC47; PAT complex subunit CCDC47

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016884 True 3450 mRNA 0.50 14 33307741 33318582

Neighbor

gene id symbol gene type direction distance location
AMCG00016879 NA coding downstream 112485 33191702 ~ 33195256 (-)
AMCG00016877 pus3 coding downstream 135808 33168630 ~ 33171933 (-)
AMCG00016878 NA coding downstream 146782 33155283 ~ 33160959 (-)
AMCG00016876 dcakd,LOC107667188 coding downstream 159312 33141438 ~ 33148429 (-)
AMCG00016869 NA coding downstream 373235 32931693 ~ 32934506 (-)
AMCG00016888 NA coding upstream 14880 33333462 ~ 33348062 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding upstream 63302 33381884 ~ 33390755 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 120970 33439552 ~ 33473811 (-)
AMCG00016894 NA coding upstream 155428 33474010 ~ 33479455 (-)
AMCG00016895 NA coding upstream 195045 33513627 ~ 33520074 (-)
G16378 NA non-coding downstream 15492 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 23514 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 51359 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 323277 32984254 ~ 32984464 (-)
G16293 NA non-coding downstream 446144 32859241 ~ 32861597 (-)
G16422 NA non-coding upstream 6504 33325086 ~ 33328341 (-)
G16502 NA non-coding upstream 309518 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 315545 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 322616 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 324396 33642978 ~ 33643661 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 128858 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 800422 32497507 ~ 32507319 (-)
G16247 NA other downstream 884303 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 1039773 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1919473 31380547 ~ 31388268 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 73207 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 170143 33488725 ~ 33513579 (-)
G16563 NA other upstream 788108 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2077410 35395992 ~ 35399030 (-)
G17032 NA other upstream 4439575 37758157 ~ 37758471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03298533_03302831 CCDC47 coding CI01000069 null 3298197 ~ 3302831 (-)