AMCG00016972 (mcm2,LOC106583719)


Basic Information

Item Value
gene id AMCG00016972
gene name mcm2,LOC106583719
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38400730 ~ 38415204 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016972
tttCGCGcgaaaaaaggagaaagaaacagTTTCtccaggaagagagagaaaagcaagtTGCAGAATGGCTGATTCCTCCGAGTCGTACAATATCGCCACCAGCCCCAGCCGGGCGTCCCGGAGAGGAGACCTGACCTCCAGCCCGGGGAGAGACCTGCCCCCCTTCGAGGACGAGTCTGAGGGTCTGCTGGGGGAGGAAGCGCTgcccgaggaggaggaggatggagagGAGCTGATTGGCGATGGGATGGAACGGGATTATCGTGCCATTCCCGAGCTGGATCAGTATGAGGGGGAGGGGCTGGACGACGATGAGGACCTGTCAGAACTGTCCCCAGGGGCCCGGGCTGCAGCTGAGGAGGCCATGCGGAGACGAGATGAAGCAAGTGGCCTGGGGGGCCGGATGAGAAGGGGCCTGCTGTACGACAGTGAAGACGAGGACGAGGATCGTCCCGCCAGGAAGAGGCGGCTGGCAGAGAGGGCAGCCGACCGAGCCGCAGCCGAGGAGGACGACGAGATGATCGAGAGCATTGAAAACTTGGAGGACATGAAGGGTCACTCGGTGCGGGAGTGGGTGTCCATGGCCGCCCCCCGCCTGGAGATCTACCACCGCTTCAAGAACTTCCTGAGGACCCACGTGGATGAAAATGGCCACAATGTCTTCAAGGAGAAGATCAGCGACATGTGCAAAGAAAACCGAGAGAGCCTGGTAGTGAATTATGAGGACCTAGCAGCTCGAGAGCACGTTTTGGCTTACTTCCTGCCTGAGGCGCCCACTGAGATGTTGAAGATCTTTGACGAGGCAGCCAGGGAGGTGGTGCTAGCCATGTACCCCAAATATGACCGCATCGCCCACGAAATCCACGTGCGCATCTGCAATCTGCCCCTCGTGGAGGAGCTGCGGTCACTAAGGCAACTGCATTTGAACCAGCTGATCCGCACCAGTGGCGTGGTGACCAGCTGCACTGGCGTCCTACCCCAGCTGGGCATGGTGAAGTACAACTGTAACAAGTGTAACTTCATCCTGGGACCCTTCTTCCAGTCCCAGAACCAGGAGGTGAAGCCGGGGTCCTGTCCCGAGTGTCAGTCGCTGGGGCCCTTCGAGATCAACATGGAAGAGaCAGTCTACCAGAACTATCAGCGAATCACCATTCAAGAGAGCCCTGGCAAGGTGGCTGCTGGAAGACTGCCCCGCTCCAAGGATGCCATCCTCCTGGCAGACTTGGTGGACAGCTGCAAGCCAGGGGACGAGATCGAGCTCACTGGTATTTATAACAATAACTATGACGGCTCCCTCAACACTGCCAACGGCTTCCCAGTCTTCGCCACGGTCATCATGGCCAACCATATCACCAAGAAGGATAACAAGGTGGCTGTGGGTGAGCTGACAGACGAGGACATGAAGGCCATTGTCACCCTGTCCAAGGACGAGCGCATCGGGGAGAGGATATTTGCCAGCATTGGACCCTCAATCTATGGTCATGAAGATATCAAGAGAGGACTTGCTCTGGCCCTATTTGGAGGGGAACCAAAGAATCCTGGTGGGAAGCACAAGGTCAGAGGGGACATCAACGTACTACTGTGTGGTGATCCAGGCACAGCCAAGTCTCAGTTCTTGAAGTATGTGGAGAAGGTGTCCAGCAGGGCAGTGTTCACCACTGGCCAGGGAGCATCCGCTGTGGGTCTCACTGCCTACGTCCAAAGGCACCCAGTGAGTCGAGAGTGGACCCTGGAGGCAGGGGCTCTGGTCCTGGCTGACCGTGGTGTCTGCCTCATCGATGAATTTGACAAGATGAATGACCAGGACAGAACAAGTATCCATGAGGCGATGGAGCAACAGAGTATCTCCATCTCCAAAGCTGGGATTGTCACGTCTCTTCAGGCTCGTTGTACTATCATTGCTGCTTCCAACCCCATTGGAGGCCGTTATGACCCCTCTCTCACCTTTTCGGATAATGTGGATCTCACTGAGCCGATTGTCTCTCGATTTGACATCTTGTGTGTGGTCAGGGATACTGTGGACCCAGTGCAGGATGAGATGCTGGCTCGATTTGTGGTCAGCAGCCATATTAAGCATCACCCTGGCAACAAGGATGTGGGGGGAGCAAGTCTGGAGGAGGTGATCCTGCCCAATACTTATGGAGTGGATCCAATACCTCAGGAGCTGCTcaagaaatatataatctatGCCAAGGAGCGCGTACACCCCAAACTGAACCAGATGGACCAGGACAAGGTGGCCAGAATGTACAGCGACCTGCGCAAAGAGTCAATGGCAACGGGCAGTATCCCAATCACAGTACGTCACATTGAGTCCATGATCCGGATGGCGGAGGCCCACGCCCGCATGCACCTGCGTGACTACGTGGTGGAGGACGACGTGAACATGGCCATCCGTACATTTTCCCGTTATCTGTCCTTCAAAAGAGACAACAATGAGCTGCTGCTGTTTATCCTGAAGCAGCTGGTGGCCGAGCAGGTGACCTACCAACGAAACCGCTATGGAGCGCAGCACGACACGATTGAGATACCAGAAAAGGACCTGACAGACAAGGCTCGTCAAATCAACATCCACAATCTGACAGCATTCTACGACAGTGACCTCTTCAAGACTAACAAATTCAGCCATGATACAAAGAAGAAGCTGATAATCCAGCAATTCTGATACCCATAGACAATTCCACAAGATGCTGCTTGAACTACTGGCTTTCTATATTATCGGGTCCTGGGGGCAGACCATGGATTATTCTAGCAGTGCTAATTGGTGGCCAAGCCATTTTTCTTTCCCAGTCTTTCACACCTGATGTGGGAGATGTGAAGATGAAATGGATTGTCTACCTATAATGTCACTGATCTGCCTTGACCCACTGAACAATGGTACAAGATACCAGAAGAACATACTGTTTATAATGTCACcccaaatgtatttgtacatgATTGGTTTAACCCTTGGTAGTTTAAGGAtgttcaaggtttttttttttttttttaacatgtaatGTGTCAATATTCTTCTGTTTCCTTGACAGCTGAAATAAGGCTGCTTCCCACACGCCATCTTCCTTCACTCCACTTCTTTGAAATCCCTTTCCTATTCTGTAATGCCAGAATTGCATTCATAACTTTGATTAAGAAGTAATCCACCTTTCATACTACATGTTAGTATCTGGTTACCTCCTCATTTGCCTCAATATTAGATATGATACCATTTGATGTAATccaaatatctgtatttttcacagatcaatttttgtttccttttgtgaTGCAGAAATCTAATGCTTTGGAGGCTAAATGGTTAAAATATCTCCCTTGggatttataatgttttttgtttctatgtGTTCTATGATCTGAATAtttacacctaccattaaagtTGCTCTTTGTGCTATGAATTTGTCTTGCCAGGTGCATTAATTTAGGTGAAATATAATTTGCCTAATGGGACTTCCCCCTAATTTGTTGGTTTGCAATCTAATTTCAGTGTTTCATTCATTTGCCTGGGGGGAAATCTCAAACActgcaaatgtaattaagaaatgcttaaaataaatggagaagGAAAAGTATACAGGGGGAACAAAAAAAGTGTCTATATACAGATGTGACCAAAAGTAATGGTACCCTtgcattataaataatgcactatttgccctgaaaagtgttgaaattaaaatatattttgtcatctATACATGCATGTATTTGGTTTGCTGTGGAACAATGCAcaaaaattgtgaaaataacGG

Function

symbol description
mcm2 Enables chromatin binding activity. Acts upstream of or within regulation of cilium assembly; retina development in camera-type eye; and thymus development. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural rod; midbrain neural rod; optic vesicle; paraxial mesoderm; and thymus. Human ortholog(s) of this gene implicated in Alzheimer's disease and autosomal dominant nonsyndromic deafness 70. Orthologous to human MCM2 (minichromosome maintenance complex component 2).

NR:

description
PREDICTED: DNA replication licensing factor mcm2

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02540 MCM2; DNA replication licensing factor MCM2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016972 True 3752 mRNA 0.49 16 38400730 38415204

Neighbor

gene id symbol gene type direction distance location
AMCG00016970 NA coding upstream 1443 38395699 ~ 38399287 (+)
AMCG00016965 NA coding upstream 49267 38337645 ~ 38351463 (+)
AMCG00016966 NA coding upstream 64084 38321965 ~ 38336646 (+)
AMCG00016960 NA coding upstream 313194 38085290 ~ 38087536 (+)
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 1840749 36533936 ~ 36559981 (+)
AMCG00016975 NA coding downstream 33404 38448608 ~ 38454664 (+)
AMCG00016974 podxl2 coding downstream 52946 38468150 ~ 38471891 (+)
AMCG00016973 NA coding downstream 64128 38479332 ~ 38492044 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding downstream 98016 38513220 ~ 38524777 (+)
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding downstream 371146 38786350 ~ 38800821 (+)
G17165 NA non-coding upstream 8658 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 264890 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 283475 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 308051 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 414073 37948232 ~ 37986657 (+)
G17214 NA non-coding downstream 120857 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 210322 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 339317 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 664211 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 1374885 39790089 ~ 39790567 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3196498 35158597 ~ 35204232 (+)
G16550 NA other upstream 4299867 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4301134 34093276 ~ 34099596 (+)
G16546 NA other upstream 4353010 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4726369 33668593 ~ 33674361 (+)
G17193 NA other downstream 80847 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 823869 39239073 ~ 39254490 (+)
G17697 NA other downstream 3976093 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5711010 44126214 ~ 44137931 (+)
G18192 NA other downstream 6239448 44654652 ~ 44656098 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020789 mcm2 coding NC_007133.7 CM002906.2 5632029 ~ 5655680 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_10664189_10683103 MCM2, MCM2.L coding CI01000030 null 10663384 ~ 10683381 (+)