AMCG00017021 (flnb,LOC107712990,LOC107657976,LOC107680511)


Basic Information

Item Value
gene id AMCG00017021
gene name flnb,LOC107712990,LOC107657976,LOC107680511
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42156679 ~ 42210307 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017021
ATGCATTACATTGTGTTGCATGACTGTGACAGAGGTGTGTTGGTGCTCTCTTTCGCAGACAGCAAAGCCATTGTAGATGGGAACCTGAAGCTCATCTTAGGCATGGTTTGGACCCTCATCCTGCACTACTCCATCTCTATGCCCGTGTGGGAGGACGAGGGCGACGAGGATGCCAAGAAGCAGACCCCCAagcagaggctgctgggctGGATCCAGAACAAGGTCCCCGATCTTCCCATCACCAACTTCAGCAACAACTGGCAGGACGGCCGGGCGCTGGGGGCTCTGGTCGACAGCTGTGCCCCAGGTCTGTGTCCAGACTGGGAGACCTGGGACACCGTGAAGCCTGTGGAGAATGCCAGGGAGGCTATGCAGCAGGCTGACGACTGGCTGGGCATCCCCCAGGTCATTACCCCAGAAGAGATCATTGACCCTAATGTGGACGAGCACTCTGTGATGACCTACCTGTCACAGTTCCCCAAGGCCAAGCTGAAGCCGGGGGCTCCCCTAAAACCCAAACTCAACCCTAAGAAAGCACGGGCCTATGGACCAGgAATTGAGCCCACTGGGAACAGAGTGATGCGGCCAGCTGTCTTCACCGTGGATACCTTCAGTGCAGGCCAGGGCCAGGTGACCGTGTACATCGAGGACCCTGTTGGAACCAGAGAGGAGGTTAAACCGGTCTTTAATGAAGGCAAGAACAAAACCTACACTGTGACCTATATCCCCAAGGTGGTGGGCCCTCACAAGGTGACAGTGCTGTTTGCAGGGCAACACATCTCCAAGAGCCCCTTTGAGGTCAATGTGGACAAAGCCCAGGGAGACCCCAGCAAAGTCACAGCCAAGGGGCCGGGTCTTGAGCCCCTGGGAAACATCGCCAACAAGCCCACCTACTTCGACATCTACACTGCAGGGGCCGGCTTGGGAGATGTTACTGTGGCAATCAGGGACCCCCAAGGCAACAAGAACTCTGTGGAGGTGATGATGGAGGACAGAGGGGACAATGTGTACCACTGCACCTACAAACCCGTCCAGGCTGGCCCACATTCTGTCGACATCAGCTTCGCCGGGATCTCCATTCCCAGGAGCCCCTTCACTGTCGATGTTGGTCAAGcCTCCAACCCCAACGCCTGTCGTGCGAGCGGCCGTGGCCTCCAGCCCCGAGGGGTCAGGGTGAAACAGGTTGCTGATTTCAAAGTGGACACGCGGAGCGCAGGCAGCGGGGACCTGAAGGTGGCTATCAAGGGACCAAAAGGCCTGGAGGAGCCCGTGAAGCAGAAGGAGATTCAGGATGGAGTGAACGCTTTTGAGTATTACCCCCACTCCCCGGGCAAGCACTCTGTGTCCATCACCTGGGCTGGCCAGCACATTCCCAAGAGTCCCTTCGAGGTCCAAGTAGGCCCTGAATCTGGGCTGCAGAAAATCCGGGCCTGGGGTCCCGGCCTGGAAGGTGGAGTGGTGGGCAAGTCGGCCGAATTTGTGGTAGAATCTGTGGGGACTGAGGCCAAGATCGAGTGCGATGACCAGAATGACGGATCGTGTAATGTCCGGTACTGGCCCACGGAGCCAGGGGAGTATGCTGTGCATGTCATGTGTGACGATGAGGACATCGAGGACAGTCCCTTCATGGCCCAAATTGTGAAAGCTTATGGTCCAGGCCTGGAAAAGTCCGGCTGCATCATCAACAAGCCAGCCGAGTTCACAGTGGATGCTATGGATGCTGGGAACGCTCCTCTTAAGATCTTTGCCCAAAATGTCGAAGGAGAACCTATCAACGTCAAGGTGAAAAACAACGGGGACGGCACCTATGCCTGCTCCTACACCCCCACCTCGCCAGTCAAGCACACCGTCGCTGTGGCCTGGGGAGGGGTCAATGTGCCCAACAGCCCCTTCAGGGTGAATATTGGGAAAGGCAGCCACCCACACAAGGTGAAGGTGTTTGGACCTGGAGTGGAGAGGACAGGACTGAAGGCCAATGAACCGACGCACTTCACTGTGGACTGCACTGAGGCTGGTGAAGGTGATGTCAGTGTTGGCATCAAGTGTGATGCCAACGTCATCAGTGATAAAGAGGAGGACATTGACTTTGACATCATCCCCAATGCTAATGACACCATCACTGTGAAGTACACCCCTCCTGGGGCTGGCCGCTTCACCATTAAAGTGCTCTTCGCTGGGGAGGAAATTCCTGCCAGTCCATTCAGGGTTAAAGTGGAGCCCTCGCATGACGCCTCCAAGGTGAAGGCAGAGGGACCTGGTCTAGGCTGCTCAGGCGTGGAAAGTGGAAAGCCCACCCATTTCACTGTGTTCACCAAGGGGGCGGGCAAGGCCCCCGTCGATGTGCAGTTCACTGGGGCTGCGAAAGGAGAACCAGTCCGTGACTTTGACATCATCGACAACTATGACTACTCCCACACGGTTAAATACACTCCTGTCCAGCAGGGGAATCTGGGGGTCGCGGTGACCTATGGTGGTGACCCCATCCCAAAAAGTCCCTTCAATGTAGGGGTGGCAGCCCCTCTGGACCTTGACAAGATTAAAGTCGATGGCCTTGAGAGCAGGGTGGAAGTGGGCCAGGACCAGGAGTTTGCTGTGAATACGAAGGGGGCCGGAGGCCAGGGCAAGCTGGACGTCCAGATCACCAGCCCGGCCAGCAAAGCAGTACCCTGCACTGTTGAGGCCCTTCCCGGGAAGGACTGCAGCCTGGTGAAGTACGTGCCAAAGGAGGAGGGCTTCTACACAGTGGACATCAGCTATGATGGCAGCCCAGTGCCAGGGAGCCCCTTCCCTGTGGAGGCCTCTCTCCCCCCCGACCCCAGCAAGGTGAAGGCTTATGGCCCGGGCCTGAAGGGAGGTCTGGTAGGGAACCCAGCTGAGTTCACAATTGACACCAAGGGTGCTGGTACTGGAGGGCTGGGCCTGACGGTGGAAGGGCCCTGTGAGGCCAAGATTGAGTGCTCAGACAACGGGGATGGCACCTGCTCTGTGTCCTACCTGCCAACGGAGCCTGGGGAGTACCTGGTCAATATTCTGTTTGAGGAGGTTCACATTCCTGGCTCCCCCTTCAAAGCGGATGTCCAGCTGCCCTTTGACCCTTCCAAAGTGCTGGCGGCAGGCCCGGGGCTGCAGCGTGGCAAGGTAGGAGAGCCAGGCCTCCTTAACGTGGACTGTGCCAAGGCCGGGCCCGGCCAGCTAGCCATGGAGGCCGTGTCGGACACTGGGGCCAAGGCCGAAACCAAGATCCAGGGCAATGCAGACGGCACCCACGATGTCACCTATGTACCCCTCACTGCCGGCATGTACACCCTGCTGCTGAAGTACGGTGGCAAAACTGTGCCAAATTTCCCCGCTAAGGTGCAAGTGGACCCAGCTGTCGATACAAGCAAGGTCAAGGTTTATGGCTCTGGAGTAGAGGGAGAAGGAGTATTCCGGGAAGCCACCACTGATTTCACTGTGGACGCTCATGCCCTGACCAAGGTGGGTGGGAATCACATCAAGGCGAACATCAAAAACCCCTCAGGTGCCAAGACAGACTGCCTGATCAAGGACAAGGCCGATGGAACCTACGCTGTCGAGTACACGCCCTTCGAGAATGGGCTGCACAGTGTTGAAGTGCTGTACGATGATGTCCCTGTGCCCAAGAGCCCCTTTCAGGTGGATGTGAAGGAGGGCTGTGACCCCTCTCGGGTGCTGGCCAAGGGCCCTGGGCTCAAGGAGGCCCTGACAGAGCAGCCCAACAAGTTCTCTATTGTCACCAGAGGAGCAGGCATAGGAGGCTTGGGCATCACTGTGGAGGGACCTTCTGAGTCCAAGATGTCCTGCAAAGACAACAAAGACGGCAGCTGCAATGTGGAATACACGCCCTATGTCCCTGGACTGTATGACGTCAACATCACTTATGGAGGACAACACATACCAGGAAGCCCCTTCAAGGTGCCAGTGAAGGATATTGTAGACCCCAGCAAGGTGAAGATTACAGGGCCAGGCCTGGGCACGGCGGTCCGAGCCAAAATCCCTCAACAATTCACCGTGGACTGCAGCAAGGCTGGCGTGGCCCCCCTCTCAGTCGCCGTGCTGGCCCCCAAAGCGGACCAGATGGACTCCCAGCCGTGGCGCAGTCACCTGAAAGCCTTTACGGATCTCTTTAAGCTCGAGCCCAAGGGTGACAACGCGGGTGTGGCTGAGCCAGTGGAAGTCACTGACAATGGTGACGGGACCCACACTGTGGCCTACACTCCTTCCACAGAGGGTCCTTACTCTGTGGCCGTCAAATATGCCGACGTGGACATCCCTCGCAGTCCCTTTAAATTCAGAGTGCTGCCCACTCATGATGCCAGTAAAGTGCGGGCAAGTGGGCCCGGCCTGACCACTGGCCTGCCTGCCAGCCTGCCTGTGGAGTTCACCATTGACGCCAAGGATGCTGGGGAGGGCCAGCTGTCAGTGCTCATTACTGACCAAGAAGGCAAGCCAAAGAAAGCCAGCATCCACGACAACAAGGATGGCACCTATAAGTGCGAGCCGCTACCACAGGCGATGCCAGCAAGTCCTGGTCTTGGCCCTACCATTGGCATTGGAGAGGAAGTCGGTTTTGTGGTGAACACAAAAGGTGCTGGGAAGGGGAAGGTGTCCTGTGTGGTGGTCACCCCCGAAGGGACAGAAGTGGAAGCGGACGTCATTGAGAATGAAAACGGGACCTTTGATATATTCTACACTGCCCCCAAGCCAGGGACGTATGGCATTTATGTGCGCTTTGGCGGAGAGAATGTTCCCAGGAGCCCATTCAAAGTGATGGCAACAGATGAGGTTCCTCTGGTGCAGCAGCAGAgtgtccagcagcagcaggccaACCCTGGAGCCTGCCCCCCCGGCTTCCAGCCCTGGGTGACAGACGGAGCGTATGTCCCAGTCAACAGCATGAATGGGACGGGATTCCGACCTTTCGATATGGTCATCCCCTTCGCCTTCAGGAAAGGTGAAATCACAGGCGAAGTCCACATGCCGTCTGGAAAGACCACCCAGCCCGAGATTCTTGACAACAAGGACGGCACCGTCACTGTGAAGTTCGCCCCCACCGAGGCCGGCCAGCATGAGATGCACATCAAGTACAATGGCATCCACATCCCAGAGAGCCCACTTCAGTTCTACGTGAACCATGCTAACAGCCCGAGTGTTACAGCCTATGGCCCAGGCCTGGTGTATGGCATTGCCAACAAGACAGCCACCTTCACCATCTACACGGAGGATGCTGCCGAAGGTGGTCTGGACTTGGCCATTGAGGGTCCATCCAAAGCAGAGATCAGCTGCACCGACAACAAGGATGGCACCTGCACAGTCACCTACCTGCCCACCCTACCAGGGGACTACAACATCCTGGTACGCTACAACGACAAGCACATCTCCGGGAGCCCCTTCACTGCCAGAATCACAGAGGACAACAGGAGACGGTCGCAGGTGAAGCTGGGCTCCGCTGCAGATTTCTCTCTGGACATCAATGAGACTGACCTTAGCCTGCTCACTGCCAGCATCAAGTCCCCGTCAGGCCGAGATGAGCCCTGCCTGCTGAAGAGACAGCCCAACAACCACATCGGTATTTCTTTTATCCCTCGAGAAGTTGGGGAGCACCTTGTCAGCATCAAGAAGAATGGCCGACATGTGGCCAACAGCCCCATTACCATCATGGTGGTGCAGTCCGAGATTGGAGACGCCAGCAAGGTGAAAGCGTACGGCCAGGGACTGGTGGAGGGACATACCTTTGAGATGTCGGACTTCACAGTGGACACCCGGGACGCAGGCTATGGTGGGCTTGCGCTCTCCATTGAAGGACCCAGCAAGGTGGACATTCAGACAGAAGACTTGGAGGATGGAACATGTGGGGTCTCCTACAGCCCTACAGAGCCTGGCATCTACATTGTGTCCATTAGGTTTGCAGAAGAACATGTTCCAGGGAGCCCGTTCACGGTGAAGGTGGCTGGCGAGGGTCGCATTCGGGAGAGCATCACACGCAAGCAGAGAGCAGCTTCCATCGCCACTGTGGGGAGCGTCTGTGACCTCAACCTTAAGATCCCAGAAATTGACATCCATGACATGTCGGCCCAGGTCACCAGCCCTTCAGGGGCGACGGAAGAGGCCGAGATTGTTGCCGCCGGCAACAACACCTACTGCGTGCGCTTCGTACCCCACGAGATGGGTGTTCACACAGTCAGCGTGAAGTACCGCGGCCAGCACGTGCCCGGCAGCCCCTTCCAGTTCACCGTGGGGCCACTGGGCGAGGGAGGGGCTCACAAGGTGCGAGCAGGTGGCCCAGGTCTGGTGAAAGCAGAGTCTGGCACTCCAGcgGAGTTCAGTATCTGGACGCGGGAGGCCGGGGCCGGGGGGCTAGCGATCGCCGTGGAGGGGCCAAGCCGCGCGGAGATCTCCTTCGAGGACAGGAAGGACGGCTCCTGCGGCGTCTCCTACATCGCTCAGGAACCCGGGGACTATGAGGTGTCTGTGAAATTCAATGACGAGCACATTCCTGACAGCCCCTTCCTGGTGCCCGTCACCGTGCCATCGGATGATGCCCGCAGGCTCACTGTTGCCAGTCTTCAGGAGTCGGGCCTCAAAGTAAACCACCCAGTCTCCTTTGCGGTCAGGCTGAACGGGGCCCAGGGCAACATTGACGCCAAAGTCCACAGCCCCTCTGGAGCTCTGGAGGAGTGCGTGGTGTCTGAGCTGGAGCCAGACAAGTACGCCATTCGCTTTATCCCCCGGGAGAACGGTGTGCATTCCATCGATGTGAAGTTCAACGGGAGTCACATCCCCGGCAGCCCGTTCCAGGTGCGCGTAGGGGAGCCGGGGCAGACTGGCGACGCGGGGCTCATCACAGCGTACGGCGCTGGCCTGGAGAGAGGGACCACGGGTACCCAGGCAGAGTTCACTATTAACAACACCAAAGCCGGGCCTGGATCACTATCCGCCACCATCGAGGGGCCCTCCAAGGTGAAGATGGAGTGCCAGGAGTGTCCTGAAGGCTACAAGGTCCAGTACACACCTATGGCCCCAGGCAACTACCTGATTGGCATCAAGTATGGTGGACCCAACCATATAGCAGGCAGTCCCTTTAAGGCAAAAGTAACTGGACCCCGTCTGGTCAATGTCAGCAATGCCAGCGAGACATCCACCTTGATGGTGGAGTCGGTGACCAAGTCCACCACCACCAACGCCTACAGCGCCATGCCCAAGTTCTCATCCGATGCCACCAAGGTGGTCAGCAAAGGAGCAGGCCTGAGCAAGGCTTACGTGGGCCAGAAGAGCAGCTTTTCAGTGGACTGCAGTAAAGCTGGTAAGAACATGCTGTTGGTGGGAGTGCACGGCCCCACTACACCCTGTGAAGAAGTGTCCATCAAACACCTGGGCAACAGGCAGTACACAGTCAACTACATCGTCAAGGAGAGGGGCGACTACATCCTGGCTGTCAAGTGGGGCGACGAGCACATCCCCGGGTCACCCTTCCACATCACCGTCCCGTAACTGAGGCAGCAATCCCGTTCCACAGAGTGActggagggggagggaaaggggTGGGGCTAGAGGATGCGGTTGCCTTCTAAACTCTGAGGCCCAAAACAAACCACGAGAAGAAAATTGCACTTGATGAAAATcagtggagaaaaaacaaccatattttatatatggatTCAGTCTTAAAACCCGATTCTTCCTACTTTGGCAATAATTGTTGttacttttttagttttctctgaaatatttaccagttttaatttcttttggTCTGTTTTGTCTATCCCAGCGTACTCCTTTAAAGAAATGCAGCTCAAGGATCTGACTTTTTGGGTTGTTCTTTTTAGAAAAGATGTCTTATATACACTACTAAGTTAAACTGGAaatttgcctttttaaattatattactaCTGATGAATGTCCgctttttctttcctgttgtcAAATCATTTTCCCTGCATGAGTATGACCGCACAATGGTGATTCCATATAGTATAATCTGCCGTCTAATGTTTTAACTGTGCTTAGAACTGGACTgcaatgtttacatgtttttattatgataaAAAGGAAGTATTTAAATATGCCCTAGTGAAGGCAAGCAAAAAGGAGGAATCTTGCTTATAGTTCAGATGGTAATTGATTCTGCGCTTGCCAAAGCTTACATTCCAAAATGTTTTAGATTGAGAATGAGCAGAAAGTGTGGCCAGGAAACAAAAGATGCATCTGCACAGCTGGCTTTGGTAGACATGAATGAAGATGAGCAGCAATacttcagaaaacacaaaaccatttcCACCATGTCAagtctctttttcttcttccgtTGTGGAGTACACATTGGAGTCGGCCCAGCACACTGTGCACTCAGGCCTACTTCTGTTTGTTAGGTTTTCTTTGCTTTGACGTGTCCTTGTTTTTCACATGTTCACATACGGTTAGGGGATTACTCTTGCAAGTTCATGCTACAGAGAACATACAGCTGGTCTACATGTGTGAACACCCTTCCCACCACTCATAAAAGTCCTGCTGTGTTACTTGCTATAAACCTAGGCGTAAGATGTTCGTGTTGATCATTTCGATGTATAGGGGGCTTAATCATTGAGACGGCGAATCTTGGCTCATATGCCACTTCAGGgttcttgttttcattccaaccgaGCGCCAAGTAACTCGATTGGTCGGAATGGCTGGTCCTCTTCCTCCTGCGCCTCACTGGCTGTGCGGTCAGCCCACACAGGGAGACCTGTCTTCACAGACTGAAAGCTCATCTGAGAAGAGTCCCTCTGTGTGTGAGCTCTGCTTTACACTCTTAGGGAAAGCACAATGTTACAACTGTTCaaattatttcttcttttttgatGTGAAACCCTTACTTGATGCATAAGAAGAGAAGGTCTCCCTTAGGTTGTTTTTGGTCTCAGTGGAGTCCTATTTTAAAGCCCAGGCTTCATTGGAAAATGAAGACAAAGGTAGACACTTCATTACTCGCTGGACAAGCGGAGGTTTCGCTCGAGTTGCTTTAGTCTTCAGGATAACTTAGTGGTGTTAGTGGTACAAGTGGCATTTGCCATTTACCAAAGCATACCACACACTTTACAGATGCCGTTCTTGCTGATTTGGATACATTTCTCATCTAAATCAAGAAGAAAAGCAACAATTTaagcaaaaagctttttaactatatatgtatatcttaaACTGCTATGTTAAGAGATTCAACTGACATTATCATATTGAATGAGGATAGATTTGTTGAGGTGATGACTTTGTCAAAGATAcatgttaaaggaaaaaacataaaaataagcaaagctctcttttttgatttttgtattagcCTGTGCCttaatgtgaaaagaaaacaaaaatactcaCAATTGATGTACATTTGGGAAATGTCAACAATAAACTGGAATTTTAAAAATG

Function

symbol description
flnb Predicted to enable actin binding activity. Predicted to act upstream of or within actin cytoskeleton organization and cell differentiation. Human ortholog(s) of this gene implicated in Larsen syndrome; bone development disease (multiple); cleft palate; and spinal disease (multiple). Orthologous to human FLNB (filamin B).

NR:

description
PREDICTED: filamin-B isoform X1

GO: NA

KEGG:

id description
K04437 FLNA; filamin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017021 True 9430 mRNA 0.54 47 42156679 42210307

Neighbor

gene id symbol gene type direction distance location
AMCG00017022 flnb coding upstream 45983 42110029 ~ 42110696 (+)
AMCG00017018 NA coding upstream 56364 42094411 ~ 42100315 (+)
AMCG00017017 slmap,slmapa coding upstream 87005 42066872 ~ 42069674 (+)
AMCG00017010 NA coding upstream 199512 41953747 ~ 41957167 (+)
AMCG00017011 NA coding upstream 204164 41943549 ~ 41952515 (+)
AMCG00017019 NA coding downstream 2302 42212609 ~ 42213383 (+)
AMCG00017020 NA coding downstream 12461 42222768 ~ 42239287 (+)
AMCG00017031 NA coding downstream 33294 42243601 ~ 42245029 (+)
AMCG00017025 NA coding downstream 36047 42246354 ~ 42267713 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding downstream 58582 42268889 ~ 42275683 (+)
G17580 NA non-coding upstream 178013 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 413906 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 439690 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 466480 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 483326 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 842779 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 1025513 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1183986 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1259763 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1289863 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 2902189 39239073 ~ 39254490 (+)
G17193 NA other upstream 3653047 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6952447 35158597 ~ 35204232 (+)
G16550 NA other upstream 8055816 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8057083 34093276 ~ 34099596 (+)
G17697 NA other downstream 180990 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 1915907 44126214 ~ 44137931 (+)
G18192 NA other downstream 2444345 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2738727 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7161715 49372022 ~ 49382218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004355 FLNB coding NC_007122.7 CM002895.2 42150896 ~ 42230491 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_01927392_02010649 FLNB coding CI01000306 null 1927333 ~ 2010774 (-)