AMCG00017369 (ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913)


Basic Information

Item Value
gene id AMCG00017369
gene name ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54842940 ~ 54846281 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017369
AGTTTGCTTGttctttacattatatatatatatatatatatatatatatatagctgtattGTTTACGACCTTTACTGTCATTTCTTTGGCCCCCAAATAGAAAGAAcgaatatatttttgttcttcaatAAAATATGGGGTATCGCCTGACCCGATCAACACTGTATTTGAACATGaataaaaagtacaattcaTCTCCTAATGgtggtatatttatttaaataagtgtttgtGTCTTATATTGATATTGTCTAACTGTTTCTATTATAATGCTGTGCATGCACTAGAGCAGCTGCGTCGCGCATCTGCGCAGATCTCCACGCGTCTCGCTGCGGTGACGTGGCCAGCGAGCAGCGCGCTCCTCCAGTATCCCAGAGAGCAGCGCGGTTCGAGCGCTGAGCTGGCCCAGAGTGCAGTGCGCGGGAGAGCTGAGCTGGCCTTAGCAGACGAGCGCAGGAGCAGACGGAGCAGAGACCGGCACCGGCACCGACACCGACACCGACACCGACCGGCACCGACATGGACAGACCCGCCGCCCTCGCCTTACTCGCGGCCCTTTGTGTCAGCCTGTGCTCAGgggaGAGCTGCCTGGAGCCGGCCATCACCCCGTCCTCCTACACCACCTCGGACGCCGTCATCTCCTCCGAGTCCGTGTTCATCGTGGAGATCAGCCTGGCCTGCCGGAACGGAGCGCAGAGTGTGGCCCTGTACGCTGACGTCAACGGGAAGCAGTTTCCCGTGACCCGAGGCCAGGATGTGGGCCGTTATCAGGTATCGTGGAGCGTGCCCCACAGGCAGGCGAGCTCTGGCCGCTACGAGGTGAAGTTCTTCGATGAGGAGTCGTACAGCACCCTGCGCAAGGCTCAGAGGAACAATGAGGATGTTGGATCCATCAAGCCTCTGTTCACCGTCAACGTGGACCACAGGggggtGTGGAGTGGTCCCTGGGTTTCCACAGAGGTCGTGGCTGCAGCCATCGGCATTCTGGTGTATTACCTGGCCTTCAGCGCCAAGGGCACCATACAGGCATAGCGGAGTGACGGACACTGACTGaccgtgtgtgagagagactgggacactgactgtgtgtgtgtgagtgagtgagactGGGACACTGACTGAGGGGGGGGTTCAGGGTGGGGGGGTCGGGTGCGTTGCTGAATTggagtaaaatt
>TU25126
tatatatatatatatagctgtattGTTTACGACCTTTACTGTCATTTNNTTGGCCCCCAAATAGAAAGAAcgaatatatttttgttcttcaatAAAATATGGGGTATCGCCTGACCCGATCAACACTGTATTTGAACATGaataaaaagtacaattcaTCTCCTAATGgtggtatatttatttaaataagtgtttgtGTCTTATATTGATA

Function

symbol description
ssr4 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4).

NR:

description
PREDICTED: translocon-associated protein subunit delta-like

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017369 True 1175 mRNA 0.55 7 54842940 54846281
TU25126 False 211 lncRNA 0.29 2 54842976 54844239

Neighbor

gene id symbol gene type direction distance location
AMCG00017382 NA coding upstream 5324 54836737 ~ 54837616 (+)
AMCG00017370 NA coding upstream 16555 54821136 ~ 54826385 (+)
AMCG00017383 NA coding upstream 152113 54688923 ~ 54690827 (+)
AMCG00017364 NA coding upstream 169598 54666880 ~ 54673342 (+)
AMCG00017363 NA coding upstream 210368 54630638 ~ 54632572 (+)
AMCG00017371 wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495 coding downstream 10545 54856826 ~ 54863910 (+)
G20218 NA non-coding upstream 45795 54795496 ~ 54797145 (+)
G20177 NA non-coding upstream 105071 54733020 ~ 54737869 (+)
G20136 NA non-coding upstream 227492 54615241 ~ 54615448 (+)
G20086 NA non-coding upstream 287615 54552140 ~ 54555325 (+)
G20028 NA non-coding upstream 497163 54343402 ~ 54345777 (+)
AMCG00017381 chchd4,LOC105017180,LOC107099931 other upstream 33834 54808466 ~ 54809106 (+)
G20156 NA other upstream 178414 54663311 ~ 54664526 (+)
G20085 NA other upstream 260541 54573474 ~ 54582399 (+)
G20099 NA other upstream 313736 54527752 ~ 54529204 (+)
AMCG00017357 NA other upstream 390886 54423553 ~ 54452054 (+)

Expression


Co-expression Network