AMCG00017381 (chchd4,LOC105017180,LOC107099931)


Basic Information

Item Value
gene id AMCG00017381
gene name chchd4,LOC105017180,LOC107099931
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54808466 ~ 54809106 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017381
ATGACCCCCCCCTCTCTTCCAGGCCTGATCCTGCCAAACGGCGAGATCAACTGGAACTGCCCGTGTCTGGGGGGCATGGCGAGCGGCCCGTGTGGAGAGCAGTTCAAGACCGCCTTCTCGTGCTTCCACCACAGCGCGGAGGAGGTGAAGGGGGCCGACTGCGTGGAGCAGTTCCGCGGCATGCAGGAGTGCATGCAGAGATATCCCGAGCTGTACCCGCAGGAGGACGACGAGGACGCGGGCAAGCAGGCCACAGCCACGGACACCCCCCCCATGGACCACGCATCCGGACACGACCAGGAGCCAGAGACCCCGCCCGCCACACAGAGCCCCGCCTCCAGCTAA
>TU25114
AGGCCTGATCCTGCCAAACGGCGAGATCAACTGGAACTGCCCGTGTCTGGGGGGCATGGCGAGCGGCCCGTGTGGAGAGCAGTTCAAGACCGCCTTCTCGTGCTTCCACCACAGCGCGGAGGAGGTGAAGGGGGCCGACTGCGTGGAGCAGTTCCGCGGCATGCAGGAGTGCATGCAGAGATATCCCGAGCTGTACCCGCCACACAGAGCCCCGCCTCCAGCTAATGCACCAGTTTCCCCGCTTAGCACAAGTCAcactagagagagagacttcACTGGCTCACCTTAAATGATCCCTGCTGGGCTGGGAGGCTGTCAGTGTTGCTGAACCCCCTCCAGGCAACGTCACCGTGAATAGTGTGTCAGACTGTGCGTCAGCCCAaagcgtgcgtgtgcgtgtgtgcgcacATGCTGTGTGCGTGGCAAGAAAAAGTGAGACCTCAGGCCCAGTACTCCTGGaccaaactaatttaatttttgtGCTGCAGATTTTAAACCATAATTACACAACTTAACCTTGG

Function

symbol description
chchd4 Enables protein-disulfide reductase activity. Involved in several processes, including mitochondrion organization; peptidyl-cysteine oxidation; and protein maturation by protein folding. Located in mitochondrial intermembrane space.

GO:

id name namespace
GO:0022417 protein maturation by protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051084 'de novo' posttranslational protein folding biological_process
GO:0045041 protein import into mitochondrial intermembrane space biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017381 False 345 mRNA 0.67 1 54808466 54808810
TU25114 True 521 TUCP 0.57 2 54808486 54809106

Neighbor

gene id symbol gene type direction distance location
AMCG00017383 NA coding upstream 117639 54688923 ~ 54690827 (+)
AMCG00017364 NA coding upstream 135124 54666880 ~ 54673342 (+)
AMCG00017363 NA coding upstream 175894 54630638 ~ 54632572 (+)
AMCG00017361 LOC105927081,LOC106929785,LOC108235569,LOC106517999,LOC103143233,LOC103465231,LOC106950531,LOC107094004 coding upstream 313207 54493577 ~ 54495259 (+)
AMCG00017355 NA coding upstream 339331 54461909 ~ 54469135 (+)
AMCG00017370 NA coding downstream 12030 54821136 ~ 54826385 (+)
AMCG00017382 NA coding downstream 27631 54836737 ~ 54837616 (+)
AMCG00017371 wdr82,swd2,LOC107712117,LOC106565976,LOC107584451,LOC107673495 coding downstream 47720 54856826 ~ 54863910 (+)
G20218 NA non-coding upstream 11321 54795496 ~ 54797145 (+)
G20177 NA non-coding upstream 70597 54733020 ~ 54737869 (+)
G20136 NA non-coding upstream 193018 54615241 ~ 54615448 (+)
G20086 NA non-coding upstream 253141 54552140 ~ 54555325 (+)
G20028 NA non-coding upstream 462689 54343402 ~ 54345777 (+)
G20156 NA other upstream 143940 54663311 ~ 54664526 (+)
G20085 NA other upstream 226067 54573474 ~ 54582399 (+)
G20099 NA other upstream 279262 54527752 ~ 54529204 (+)
AMCG00017357 NA other upstream 356412 54423553 ~ 54452054 (+)
G20013 NA other upstream 415875 54307795 ~ 54392591 (+)
AMCG00017369 ssr4,LOC107671948,LOC107737640,LOC108425558,LOC107560913 other downstream 33834 54842940 ~ 54846281 (+)

Expression


Co-expression Network