G16375


Basic Information

Item Value
gene id G16375
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33255653 ~ 33256382 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20354
ACCACATTGAATCGCTCTTCCAATTCCTCCTCCCCTGGCATGGGCagtttggggggtgggggctgctTCTGTGGGGGGCTGGCGGCAGGGGCAGAAGTGACCATCTTGGTCTCCTTGCCCTGCGAGGAGAGCTCCATGCTCCCGGCTGCATTGCCCATTGCAAGTCTCTTCAGGGCGGCAAAATCCAGAATTCAGATAGCAAGAAATCCTTCCGTCCTTAGTCCTCTCGAGGTCCGACGCAGAAAGTTACCACAGAGCGAAGAGTTAAATCCAACCAAAACTGCATAACAGAGGGCAAAATCAGCATGTGGGTGGGTATCTCCTTCAGAAGAGTTCCTGAGACACGAGCTGTGAGGCCACTGCCACTTCCGACGCCTGGCGACTTCTTTGACCTTTACAGACAGGGCCAGTCCAAAGGAGCATCTTCTTAAGCGTCCCCCAGCTTGCGAGTGCTCTTCTCTGGGTTGGTGGGACCAAGAGGGGgtggtaaaacaaaatgttgacaGGACTGGCTACTGGttagagaagagagaggagaaaaacatcaactaacaaaaccaaaaccccAACGAAGACTGTCAAAGCTCTTTCGAAAGTCGATTGCCTCACAGCATGAGTGAGGAGAGGAagtcttgagagagagagagagagagagagagaggagaggagttgGGAGTTTCAAACATTCACATATAGATAGCAGCAGCAGCGAAAAAACCAACCACacaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20354 True 730 lncRNA 0.52 1 33255653 33256382

Neighbor

gene id symbol gene type direction distance location
AMCG00016879 NA coding downstream 60397 33191702 ~ 33195256 (-)
AMCG00016877 pus3 coding downstream 83720 33168630 ~ 33171933 (-)
AMCG00016878 NA coding downstream 94694 33155283 ~ 33160959 (-)
AMCG00016876 dcakd,LOC107667188 coding downstream 107224 33141438 ~ 33148429 (-)
AMCG00016869 NA coding downstream 321147 32931693 ~ 32934506 (-)
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding upstream 51359 33307741 ~ 33318582 (-)
AMCG00016888 NA coding upstream 77080 33333462 ~ 33348062 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding upstream 125502 33381884 ~ 33390755 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 183170 33439552 ~ 33473811 (-)
AMCG00016894 NA coding upstream 217628 33474010 ~ 33479455 (-)
G16325 NA non-coding downstream 271189 32984254 ~ 32984464 (-)
G16293 NA non-coding downstream 394056 32859241 ~ 32861597 (-)
G16292 NA non-coding downstream 398188 32854781 ~ 32857465 (-)
G16250 NA non-coding downstream 818970 32434236 ~ 32436683 (-)
G16249 NA non-coding downstream 827573 32427852 ~ 32428080 (-)
G16377 NA non-coding upstream 27632 33284014 ~ 33284227 (-)
G16378 NA non-coding upstream 35649 33292031 ~ 33292249 (-)
G16422 NA non-coding upstream 68704 33325086 ~ 33328341 (-)
G16502 NA non-coding upstream 371718 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 377745 33634127 ~ 33634339 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 76770 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 748334 32497507 ~ 32507319 (-)
G16247 NA other downstream 832215 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 987685 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1867385 31380547 ~ 31388268 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 135407 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 232343 33488725 ~ 33513579 (-)
G16563 NA other upstream 850308 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2139610 35395992 ~ 35399030 (-)
G17032 NA other upstream 4501775 37758157 ~ 37758471 (-)

Expression


Co-expression Network