G16679


Basic Information

Item Value
gene id G16679
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34754171 ~ 34757005 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20712
AAAACCCTTTATTAGCATAGACAGTATACAGAGTGTCCTGAAATTTTGCAAGCAACtcagaaacatatatatatattattaaaaagaaaagctggaACAATTCACATCAAATAAAAGTCAATCCAGGTTGTTGGAGCAAAACGTGGCCCCTGGATGAGACAAACACTGTGAAAATCCAGCTGTTTCAGAGACGGAAGGAGACAGCTGTTGACACATCAAAAGTATTAGTGAATACGAATTCAGCCTGCTATTAAACACACTTTAATTCAGGTGCACGCTGCTGGAAAACAGAAGAGGATACACCATGGACCAAAAAAAAGATGTAAACTagtcattaaaaatgaaaaaacctTGAAAAGTAGCATTGTCCACAAGTTGTCTAATGTCATCTCAGCATCAGCTAGTACTGAACAGTCTTCAGATTGTTTCAATGTTTAGGATTTCGGCACAAAACAAGTGTTTGACTTCTGCGGATTAAGTTTTCCCTTTAGGGGTAAAGAACACTTcagtgtatttcattaaaatgtaaattaatgctGCATAAAATTATGATTGAAAGTCATTGAATATAGATTTGTTTACCAGCAACGATGTATTGATTTGTTGCACACAAACAGGCAGCCCTTGGTTTTGTAAATGGTTGATTAACATTTGCTGTGTCCATCGCAGTCCTCCAAACTTATAATCTAGCAGCTTTGACCTGGAGAGCATACGTACTGAACACAGCACCTAGCACGGCAAGACACCCTCACACAGCAGGATCCGTTATAGCCTGGACCTGCGCTTCAAACTGGGTGCCCTGCAGCAGGCCTATACCACAGTCGCAGGTGTGCTCAGGAAACAAACATGTTTGGAGTTTGCTTAGCTTAACATGGCATGGTTCTGTACCAAACGGCTGGTGTGCAGTCTATGACAGGTACAGGCAATGAAACAGCCTATCAGGAACAGGCTACACGTGCAACAAGAGACGTGGCATCCAGGTACACAGTAACAtccaaacatacagcaagaTTCATAGGTTGTTTTGCATCAGTGTCCCATTCACACAGTAACTTCAATCCTGTTACCACCTTTGAAAGCAGCGTCTTTTTATGTAGGCGTGTAGCCCAGCAGCTTATTTAAATTCCTGCCCCCAGTTTCTGAGGTACAAATGAAGTAGATTTACACAAATCCAATATACAATGGGGGCTGCcatgttatgtttttaacatCTGTCACTGTTGAAAGTCCTATGTTGAAATCTATCAGGATGACATTATTTGTACATAGCTTTGATAGGGTACAGGGTGCTAAACGGAAATGGCTTTAGTgagtttaaaaaagcaaagcaaatggCTTCAGTTTCTTGATATTACAGCGTCATCTTTTTCTCAAATTCTTAAATTCCCTGGGATTGTCTGCTTCCTTGATGACAATATACATTTGACAAGCGGAACCGTTGAACTAAAAAGACAggtagtataataataaaaacaaaaaataatttaactgaTTACTGAACAAAACAGTTAAATATGAATAAGTTCAAATCAAAATTATTTAGACAGCACTTTATAGCTTACTCAAGCTAGTGATTGAGGTTTGTGGCGGAAGCAAACCCAACTCTTTTTAGGAGGTGTAATAAAAAGGtggaaataaattgaatataaatCTGTTGCAAATATGACATCATATGAACAAGAAACATAGGATTATAAGAGTTGAGATCTGTTTCACAGGCCAGTACaacaatgtgtgttttgaaatgacATTACACACCATGGGGCAACTGCTTTTCATGACAAGACCAACTTCAGACTGCCCACTCCCTCTCCTATCTGGTTGCCATCTCAAGTGCTTCTTCCATCTCGAGGCTTGGCACGGAGATGGCGAAGCCcagaatatatacacaaacacatatacacaaacacacacacaagttttcAAGTGATAGTGGAAATGCTTTGACCTCCATCTCCAAACCTCTGGTCCCGTGGTGCTTTTCAGCATTAAACGGAATACAAAAAAGTCAGCATGGAATCAAGCACTGAGGACTTCAAAATAGACACAGATCAGACCTCTCTTCTCATTCAAGTAAtaggtgttgttgttttgttttttaaactgtatacatGACAAATGCCCAGTTCATCACACCACCAAACCCTGTTTAAACAAACTTCAAATCCCAAAAATCCCTTCAGAGGCTTTCCTGGATTAAGGTCCCTTTTTGAGTTATTCAGAAAAGGAATGGAGATCACGATTAACCTTGACAATAACGGCCACCTCGGCATAATCAACAGTCAAATGACACCAGTCTAGAGATCTTGAGACACGGTGTGTAGTACGTTCCAATCTGAAAGCCACCATAAACGCACAGGGTCACGGTTACCAAATTACAGCACATGATGagcatttcaagaaaaaaaacaaaaaaaaaactccatcctctttttaaaatgtgttctcttCAGAATATAAGGAACAGCCCGCGTTTCATCTTGGTAGAATAAGGACCAAGATTTTCAGCCATCTTCACCTCTCGGATACACATTTCTTTAAGTtgcgtttttagtttttttgtttaaatgtccaAACTTTTTAAACTTCGGTGCAAAGGTCTCTACAGCCCCACTTATGCACGGTACCTCACTTATCAATCAGGCCGCTCTCTTTCAACTTGAAATAGAAGAACTTCTCCAGCGTGTTGGCACACTTGCAGTACTCGCTGTCGGGCGGGTTGTACTCGCGGCAGTTCGTGATGATGCGCTGCAGGTCGGCAATGAACAGCTTCTTGGTCACGTAGTAGCGGTTCTTGAGCCGCTCGGTCATGG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20712 True 2813 lncRNA 0.40 2 34754171 34757005

Neighbor

gene id symbol gene type direction distance location
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding downstream 491161 34214899 ~ 34263010 (-)
AMCG00016908 NA coding downstream 745371 34000597 ~ 34008800 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding downstream 873493 33877103 ~ 33880678 (-)
AMCG00016904 LOC107583088 coding downstream 1157929 33582724 ~ 33596242 (-)
AMCG00016892 ddx42 coding downstream 1178875 33554101 ~ 33575296 (-)
AMCG00016931 NA coding upstream 334448 35091453 ~ 35096502 (-)
AMCG00016936 NA coding upstream 478587 35235592 ~ 35245651 (-)
AMCG00016937 NA coding upstream 516918 35273923 ~ 35312713 (-)
AMCG00016940 lasp1,LOC102776212 coding upstream 647625 35404630 ~ 35410252 (-)
AMCG00016939 NA coding upstream 654574 35411579 ~ 35420041 (-)
G16669 NA non-coding downstream 17622 34736339 ~ 34736549 (-)
G16654 NA non-coding downstream 103997 34649953 ~ 34650174 (-)
G16653 NA non-coding downstream 154240 34597198 ~ 34599931 (-)
G16650 LOC106601024,LOC106607294,LOC103359488 non-coding downstream 193103 34558579 ~ 34561068 (-)
G16635 NA non-coding downstream 280624 34472336 ~ 34473547 (-)
G16693 NA non-coding upstream 18820 34775825 ~ 34777048 (-)
G16712 NA non-coding upstream 359107 35116112 ~ 35118906 (-)
G16761 NA non-coding upstream 459098 35216103 ~ 35222538 (-)
G16790 NA non-coding upstream 513112 35270117 ~ 35270539 (-)
G16804 NA non-coding upstream 605118 35362123 ~ 35362326 (-)
G16563 NA other downstream 646230 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 1240592 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 1319520 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 1575288 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 2246852 32497507 ~ 32507319 (-)
AMCG00016938 NA other upstream 638987 35395992 ~ 35399030 (-)
G17032 NA other upstream 3001152 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 3118245 37875250 ~ 38058939 (-)
G17421 NA other upstream 6459646 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 7179921 41936926 ~ 41938563 (-)

Expression


Co-expression Network