AMCG00017474 (fgf2,LOC106604591,LOC102794353)


Basic Information

Item Value
gene id AMCG00017474
gene name fgf2,LOC106604591,LOC102794353
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5779880 ~ 5792505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017474
gagtgagtgagtgagtgagtgtggtggtggggggaacGCAGGCGCATTGAGGCACAGAGGGTAATATTAGACCGATCCAGATCTCTCCCTCTACCAGCTGCACAGCAGTAAACATTTCAGTGCAAGTGACTGGAAAAAACGGGGAAGTCCTTGCAATCTGCAGGACAAGAATCTGAGAATCAAACCACTATCAAGCTGGCGCAACTTTTGCTTTCTCTAAGAGGACCCAGGAGGTGAACCTTTAAGACTTACACAGAcggcctttctttttttcttcagtattgGAGCATGCAAAGTGTTTTAGCAgcactttcttaaaaaaaagaaaaagaaaaaaagctctCTGGCTGAGCCTTTCAGAAGAAGCACAGTCtttcagcagcaacaacagGGGCTGGATTAGGAAGGAACAGCACTCAGTGGTCAGCTTGTGGAGAACACTTTATAAAGGCAAAGAAGGGGAGCCGAGATGGCTACAGGAGAAATCACCACTCTTCCCCCCACACCTGAAGATGGAGGCAGTGGCACTTTCCCTCCTGGAAACTTTAAGGAGCCCAAAAGGCTGTACTGTAAAAACGGGGGATACTTCTTGAGGATAAACTCTGACGGCAGAATAGATGGAACCCGAGAGAAAAATGATCCTCACATAAAGCTGCAGCTCCAGGCGACTGGGGTTGGAGAAGTCGTCATCAAAGGGATGTCTTCCAACCGGTATCTTTCGATGAATGAAGATGGTAGGCTGTTTGGATTGAAATGTCCCACAGATGAATGCCACTTCATTGAAAGGCTAGAGTCCAACAACTACAACACCTACCGCTCTCGGAAGTACCCTGATTATTACGTGGCGCTGAAAAGGACTGGGCAGTACAAGTCAGGATCTAAAACGGGACCTGGCCAAAAAGCCATCCTCTTCCTTCCCATGTCTGCAAAGAGCTGATTGTACTCTGCCAAAAAAGGGTGTTATCTCTCAAAATACACTTCATAAAATACTTAGGTACTGAGAacatgtgaaatgtttaaaatggcGCCACACAGCACATCGCCCAGATGATGTGACTATCACTTTTACAGTTTGCAAGTAGGTTTCTTTGAACataggaacaaaaacaaacacagatgaaatcacaaaggcatttatttttaatacacagaATGTGAATGATTTTAACCTGAGACAATACAAGAACCAAGTATTCAGTCTTGGGtgtaaaaactatattttaatatattaaaagggatattttattatttatgaaaggttacagaatatatatacagatgcaGTCAGTACCACATGTATGTAgtcatattaatgtatatacaattaaaaagaccCCCTGGTAACAGTTAAAATGCCAACAGGTATTAAAACCTAGAATACTGCTAAGTGACTTGAAAAAATACTCAGTTCTGATCAGATTAAGACACATTTTCATACATCTTGGGCAACTCTTTGTGGTACAGCTGATAGAACAGCCCTGTATAGACCGCTGGCAGTTCTTTTACCAGGAGGTCAATTTTATCAAAGCCCTCCCTATATCCATACAACAGGAGTTTTGCTACCCTGCTCGTAATGGGCGTGGTTTCCTTGGTCTTGGCTAGTTCTGCTACCTCCAACCATTCACATTTCAAACACTCCTGACGGCAAAAGTTAATGTTGAATGTCAACGGCTTGAGACGACAGATGATGTACATATCTGACATGCCAAAGGCTCCGGGGTGGTTATGCTGCTGTCTTATACTCAAGAGGGACTTGAACTCTGTGTGAATGCCCGTCTCTTCAAAGACTTCACGGACAGCTGTGTTGCCTGtgaaaaaaacagagagaagagagaagcatttctttatttataatggATACTGGATCTGTTAACCATGAATGGCAGAGATTGCCATTACACTGGTAATGACCATGTATAATAAGTTATGGCTATTGCTAATCCTCTTTCTGGAGGCTTGAGCAACAAGGAAGATGAACATCTGCTTTGCACTGGGGTGTTTCAGCATATTCCAACTGAGCTGGCCATTGATAGCCTACAGAATCGTTTAGGGACATCGCTTTATCTAATATGAGTGACTGCTGCTTAATAAAAGACACCCACATTTTATGCAGTTTCTTACAACAGGACATGCTTCAACTTTCAATTCCAACAGATGTTCATATATTGTACTTCACAAAATCATTTCTGCATTGTGCAATACAACAGTGAGTTcctagaagaaaaaacactgactCCCTTTGGATTTGTGTTTTCTATTGCCCAACAGTTCAGACAATTTTCCCCATTGTGGAATTTCATTCCTCCACATCTTTTTCAGTGTTAAAGATGAGTGGGTTGATTGTCATCCCTTTCAGTAGTCAAAggaatggatttaatcaaaactttgacccatcttCCAACCACCTATTCCAAATCCAGTATCTGATAATATTTTCCTTTGGGCAGATAAATGAGGTCTAGAAAGAGAAATGCCAACCAGTGTAGAATGTGTGACTAACACTAGTACTGggttaaatgttttgattttatgtgGCCCTAAATTCACTTTTCTGTACTCAAAGAACAAGAAATGTTCATTACCCTTCTTCAGCCAATTTGCTAAagccttattttcattatatggCTGATATCTAGATATATGCCTCTTGTGGCAGgacaaaaaatcatatttactcATAAAATTAATGTTATCTCTATTAACACAGTTAAAATTGGTGAGGAgataacatacactcacctaaaggattattaggaacacctgttcaatttctcat

Function

symbol description
fgf2 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in extracellular region. Predicted to be active in cytoplasm; extracellular space; and nucleus. Is expressed in brain; eye; forerunner cell group; and kidney. Human ortholog(s) of this gene implicated in several diseases, including Parkinsonism; corneal neovascularization; diabetic neuropathy; gastric ulcer; and impotence. Orthologous to human FGF2 (fibroblast growth factor 2).

NR:

description
PREDICTED: fibroblast growth factor 2

GO: NA

KEGG:

id description
K18497 FGF2; fibroblast growth factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017474 True 2776 mRNA 0.41 3 5779880 5792505

Neighbor

gene id symbol gene type direction distance location
AMCG00017471 NA coding upstream 139638 5625024 ~ 5640242 (+)
AMCG00017470 kiaa1109 coding upstream 155726 5538512 ~ 5624154 (+)
AMCG00017461 exosc9,LOC107746036,LOC101063486 coding upstream 320178 5425431 ~ 5459702 (+)
AMCG00017465 NA coding upstream 400732 5378459 ~ 5379148 (+)
AMCG00017462 NA coding upstream 404426 5373357 ~ 5375454 (+)
AMCG00017475 NA coding downstream 16323 5808828 ~ 5816998 (+)
AMCG00017480 NA coding downstream 158331 5950836 ~ 5951792 (+)
AMCG00017477 fat4 coding downstream 520277 6312782 ~ 6317887 (+)
AMCG00017479 fat4,LOC106604622,LOC102795788 coding downstream 568854 6361359 ~ 6370652 (+)
AMCG00017478 LOC106611628 coding downstream 589854 6382359 ~ 6400405 (+)
G90647 NA non-coding upstream 102636 5676901 ~ 5677244 (+)
G90561 NA non-coding upstream 316816 5440212 ~ 5463064 (+)
G90552 NA non-coding upstream 367191 5407648 ~ 5412689 (+)
G90554 NA non-coding upstream 367619 5411731 ~ 5412261 (+)
G90551 NA non-coding upstream 372351 5405442 ~ 5407529 (+)
G90691 NA non-coding downstream 185659 5978164 ~ 5978368 (+)
G90703 NA non-coding downstream 490652 6283157 ~ 6283441 (+)
G90709 NA non-coding downstream 609229 6401734 ~ 6402188 (+)
G90731 NA non-coding downstream 935527 6728032 ~ 6763072 (+)
G90737 NA non-coding downstream 1082462 6874967 ~ 6892610 (+)
AMCG00017446 NA other upstream 1091657 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 1173309 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 3084427 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 5567944 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 5681483 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 937233 6729738 ~ 7188643 (+)
G90877 NA other downstream 1875678 7668183 ~ 7671850 (+)
G90881 NA other downstream 1900080 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2013873 7806378 ~ 7813639 (+)
G90955 NA other downstream 2339863 8132368 ~ 8132854 (+)

Expression


Co-expression Network