Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017511 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 8175730 ~ 8177002 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09310 | GSH; homeobox protein GSH |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017511 | True | 516 | mRNA | 0.55 | 2 | 8175730 | 8177002 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017509 | NA | coding | upstream | 152602 | 7992115 ~ 8023128 (+) |
| AMCG00017510 | NA | coding | upstream | 340517 | 7830998 ~ 7835213 (+) |
| AMCG00017503 | NA | coding | upstream | 463536 | 7702114 ~ 7712194 (+) |
| AMCG00017495 | NA | coding | upstream | 508655 | 7663708 ~ 7667075 (+) |
| AMCG00017493 | NA | coding | upstream | 517605 | 7655383 ~ 7658125 (+) |
| AMCG00017514 | pdgfra | coding | downstream | 14785 | 8191787 ~ 8212616 (+) |
| AMCG00017515 | NA | coding | downstream | 70957 | 8247959 ~ 8282506 (+) |
| AMCG00017518 | NA | coding | downstream | 183178 | 8360180 ~ 8376658 (+) |
| AMCG00017517 | tmem165,LOC106584122 | coding | downstream | 199822 | 8376824 ~ 8381670 (+) |
| AMCG00017525 | NA | coding | downstream | 383130 | 8560132 ~ 8565811 (+) |
| G90924 | NA | non-coding | upstream | 185770 | 7989696 ~ 7989960 (+) |
| G90922 | NA | non-coding | upstream | 207402 | 7968120 ~ 7968328 (+) |
| G90921 | NA | non-coding | upstream | 209122 | 7966320 ~ 7966608 (+) |
| G90919 | NA | non-coding | upstream | 212454 | 7963043 ~ 7963276 (+) |
| G90917 | NA | non-coding | upstream | 253090 | 7922192 ~ 7922640 (+) |
| G90991 | NA | non-coding | downstream | 52313 | 8229315 ~ 8229576 (+) |
| G91004 | NA | non-coding | downstream | 109290 | 8286292 ~ 8286728 (+) |
| G91104 | NA | non-coding | downstream | 555366 | 8732368 ~ 8732632 (+) |
| G91128 | NA | non-coding | downstream | 606865 | 8783867 ~ 8784089 (+) |
| G91135 | NA | non-coding | downstream | 642711 | 8819713 ~ 8824837 (+) |
| G90955 | NA | other | upstream | 42876 | 8132368 ~ 8132854 (+) |
| AMCG00017508 | NA | other | upstream | 362091 | 7806378 ~ 7813639 (+) |
| G90881 | NA | other | upstream | 482383 | 7692585 ~ 7693347 (+) |
| G90877 | NA | other | upstream | 503880 | 7668183 ~ 7671850 (+) |
| AMCG00017486 | NA | other | upstream | 987087 | 6729738 ~ 7188643 (+) |
| AMCG00017526 | paics,LOC107555752 | other | downstream | 510695 | 8687697 ~ 8700754 (+) |
| AMCG00017527 | tkfc,LOC107731922,LOC107095500 | other | downstream | 574711 | 8751713 ~ 8764903 (+) |
| G91281 | LOC103376870 | other | downstream | 1342771 | 9519773 ~ 9583280 (+) |
| G91452 | cc2d2a | other | downstream | 3702612 | 11879614 ~ 11880499 (+) |
| AMCG00017600 | NA | other | downstream | 5019893 | 13196895 ~ 13259760 (+) |
