AMCG00017517 (tmem165,LOC106584122)


Basic Information

Item Value
gene id AMCG00017517
gene name tmem165,LOC106584122
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8376824 ~ 8381670 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017517
ATGAAATCGCTGGGATGGGATCCGTGCGCTCAGGACTGGGCTTTAACCTCCCCGCTGACGTGGGCCGGAATGGTGATCAGTGAAGCTCCGCGTGGGCGCGGAGGCAGACTCGTCCTGTCGCTGCTGGCGGTGGGGCTGCTGTCGGCCGCCGTCCGGGCGATCCAGGaagagcagagagcagagccGGATCAGCCGCAGCAAGAGAAAGCCCCGACAGCACATGTCGTAGGCCCCATCATTGGCGAAGATGACCCAAGCAAAGTCAACCTGGGCTTTATCCATGCCTTTGTGGCGGCCATTTCCGTTATCATTGTGTCCGAACTGGGGGATAAGACCTTCTTCATAGCCGCAATCATGGCTATGCGCTACAATCGTCTGACGGTGCTGGCTGGAGCAATGCTTGCTCTGGGGGTGATGACGTGTCTCTCAGttCTTTTTGGCTATGCCACCACCATCATCCCCCGAATATATACCTACTACGTGTCCACCGCGCTCTTTGCCATCTTCGGAGTGCGGATGCTGCGGGAGGGCATGAAGATGAGTCCGGACGAGGgccaggaggagctggaggaagTTCAAGCTGAGATCAAGAAGAAAGATGAGGAACTGCAGAGATCCAAGCTGGTGAACGGAGCAGCAGACGTGGAAGCCGGCTCTGGAACCAGCATGCCCCAGAAGAAGTGGCAGAGTGTCATCTCCCCGATCTTCATCCAGGCCTTCACCCTCACGTTCCTGGCAGAATGGGGTGACCGCTCCCAGTTGACCACCATTGTGCTGGCAGCTCGAGAGGATCCTTTCGGGGTAGCTGTTGGCGGAACGCTGGGGCACTGCCTGTGCACAGGACTGGCAGTGATTGGAGGACGGATGATTGCTCAGAAAATATCTGTCCGAACTGtTACGATAATCGGTGGGATTGTGTTCTTGGCATTTGCCCTCTCGGCTCTCTTCATCAAGCCAGATGCTGGATTTTGACCGATTTGTATTCCTGTGCTGTGTGAAGATTCATCCAGagtattttctgtatatatgtacaattattCATCTGTGTGATGGAAGCCGTACATGTATGGTTCCGCTCCAGTCCTGCTCTTTTGTGAGTTTGCGACCCATTCACTGCGTGTGCTCTTCAagcaatttctttattttggtaGAAGAAGTCTTCAAATATAGGAAATGTTTACTGCTACTTATTGACTACATTGTAATAAGAAACAAGGCCAGGGCCATCTTAACAGTTTGAAGATATTTCTTCTGGACTCAGTggcagttttgtatttatttaatgaaattagtgtgaagatttaaaatatttttgctagtttttttttttttttttaaatcaggtaCTGTACATGTCAGGGAAATTTTACATTTGCCGGGTTGAAAACTTACAAGGTAACTACATTGTCAATATTTGACACAAAGCAACTTGACCGACTACAAAGGAAATATTGAGCCACATCGTTGTGATGCAGAAGAATAGATGATTGTAAACCCTGattcatataaataatgttccaaattaaaccaataaaatcTCTTCCACGGTGTGATATTAGCCACCATTTTAAATCCATGCTGCATTGGATTCTTCCTGATTACTGCAATGACGAAGAGGGGGGGAAATGAGTCAAGACTACAATATAGGGTTTCGATGCAAATGTAAGCCCAATTCAGTAGGAATAGACACACAAGAGCCAAACTCggaataattaaacatattcaCTGCGTTTGTGAATCGTTTGCTACAAGGCAACAAACCAAGGATGACCGTTCAGTAGTTTGATGACACATATTTGAGTTGAAGTGATTATTTTTGCAtcataaacattttcataatataCAAAGCACATGTTTTAAAGTCTCAGGAGACCAGAGATCCAATTTGATTACATcttagtgtttgtttgct

Function

symbol description
tmem165 Predicted to enable calcium ion transmembrane transporter activity and manganese ion transmembrane transporter activity. Acts upstream of or within osteoblast differentiation; protein N-linked glycosylation; and skeletal system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in head; heart; and heart tube. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIk. Orthologous to human TMEM165 (transmembrane protein 165).

NR:

description
transmembrane protein 165

GO: NA

KEGG:

id description
K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017517 True 1912 mRNA 0.46 7 8376824 8381670

Neighbor

gene id symbol gene type direction distance location
AMCG00017518 NA coding upstream 166 8360180 ~ 8376658 (+)
AMCG00017515 NA coding upstream 94318 8247959 ~ 8282506 (+)
AMCG00017514 pdgfra coding upstream 164208 8191787 ~ 8212616 (+)
AMCG00017511 NA coding upstream 199822 8175730 ~ 8177002 (+)
AMCG00017509 NA coding upstream 353696 7992115 ~ 8023128 (+)
AMCG00017525 NA coding downstream 178462 8560132 ~ 8565811 (+)
AMCG00017522 exoc1,LOC106560275 coding downstream 185997 8567667 ~ 8586671 (+)
AMCG00017521 NA coding downstream 209499 8591169 ~ 8601655 (+)
AMCG00017523 NA coding downstream 265776 8647446 ~ 8654342 (+)
AMCG00017533 sgcb,LOC107597442,LOC106584109 coding downstream 417665 8799335 ~ 8806468 (+)
G91004 NA non-coding upstream 90096 8286292 ~ 8286728 (+)
G90991 NA non-coding upstream 147248 8229315 ~ 8229576 (+)
G90924 NA non-coding upstream 386864 7989696 ~ 7989960 (+)
G90922 NA non-coding upstream 408496 7968120 ~ 7968328 (+)
G90921 NA non-coding upstream 410216 7966320 ~ 7966608 (+)
G91104 NA non-coding downstream 350698 8732368 ~ 8732632 (+)
G91128 NA non-coding downstream 402197 8783867 ~ 8784089 (+)
G91135 NA non-coding downstream 438043 8819713 ~ 8824837 (+)
G91151 NA non-coding downstream 456977 8838647 ~ 8841038 (+)
G91307 NA non-coding downstream 1784860 10166530 ~ 10166747 (+)
G90955 NA other upstream 243970 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 563185 7806378 ~ 7813639 (+)
G90881 NA other upstream 683477 7692585 ~ 7693347 (+)
G90877 NA other upstream 704974 7668183 ~ 7671850 (+)
AMCG00017486 NA other upstream 1188181 6729738 ~ 7188643 (+)
AMCG00017526 paics,LOC107555752 other downstream 306027 8687697 ~ 8700754 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other downstream 370043 8751713 ~ 8764903 (+)
G91281 LOC103376870 other downstream 1138103 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3497944 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4815225 13196895 ~ 13259760 (+)

Expression


Co-expression Network