AMCG00017520


Basic Information

Item Value
gene id AMCG00017520
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8473490 ~ 8514955 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017520
ATGAAGCCAACTCTCTGCCAACACAAGCCTCTCCACAGCGGCGAGGCGGCGAGCAGCGGCTGCAAGAGCGCCAGCAGCCGCGCAATGAGGAGCCCCCCCTGCACCGCCGGCCTGACCCTGCTGCTCCTGCTCGTCTCGACGATACCAGCCTGCAAAAACCTCCAGTCTCAGgaTTTAAAAGCAAGGGACCACACTAAAAGGGGGGAGGTGGCTTCATATCATGAATACCAGTCAGCCAAGAAACGGAAGAAGATCAACTTCCTTTGTCTAAAAGATAACAGTTATAAATGTATGAGTTTTGAAGAACTGGAGAAAGCAAAGGATGATTTTGATGAAGAGGATCAGCGACTGATAGAATTGTTCAGACAAAGATGTATTACTGAGTGGAAATCTAATCCAAAAGGAAAACCATTTGGGGAGCTGTGTGAAATATTTGGAGACCAATATGTGAGGGAGGTCACACAGGCTGGAGAAGATGTATGGGTCGTGCTGCACCTTTACAGACCAGGaatacTTCTGTGCAGACTCCTCAATCAGCACTTCAATCACCTGGCCCAGAAGTTCCCAAAAACCAAATTCCTGAAAATCATAGCTGAGAGTTGTATTCCAAACTACCCTGACAGGCATTTGCCCACTGTCTTTGTGTACAAGAAAGGGCAGATTCATGCACATTTAATTGGCGGGGCTCAGTGTGGTGGACAAAACGTACTGGAAGAAGAAATAGAGGGGACACTGACCGCTATTGGGGCAGTTCAGACAGATATCAGGCACCCCACAGAAGAGGCAATCGTGCACTTTGGTGTCTGCGGCTCATGTTTCATAGATGAGGTTTACATGTGTTCAGATTCAAATGCACATCGGAATATCAGCACAATAAACAcgtaa
>TU113572
ATGGTGACGCGCTTGGTGCTCCTGGTGCCGAAAGAAAGGTGTGGCCAAAAGCTTTAAAATTGTTCGGAGAGGCGGACAGGAGCCTCAGAGACTGTGAGAGCAACGCAACGGCACCAGCAGCGACTGGGAAAACTATCTGTTAGCGACTGAGCATGAAGCCAACTCTCTGCCAACACAAGCCTCTCCACAGCGGCGAGGCGGCGAGCAGCGGCTGCAAGAGCGCCAGCAGCCGCGCAATGAGGAGCCCCCCCTGCACCGCCGGCCTGACCCTGCTGCTCCTGCTCGTCTCGACGATACCAGCCTGCAAAAGTGCTCCAGCACTACTGAAAGCTCCACAGGCAGAAAATGAATTACAGCTTTGGAATGAGATAGATGATGTGTGTTCACCTTTCCTCTCTACAGACCTCCAGTCTCAGGCGTCCAGTGCATTGGAAGAACTTTGCTACTTGGTTATGGGAATTCATAAATCTCAGgaTTTAAAAGCAAGGGACCACACTAAAAGGGATGATCTTCAAGGACCGGGGGGCATTCAAAGCAGAGGATACTTCTTGTTTAGGCCAAGAAACGGAAGAAGATCAACTTCCTTTGTCTAAAAGAACTGTTGACAGTTGGACCCCTGTagataaaataaatgggaaaggaatgcttcacaaccacacagcAAATCCCAGCTGAAATGGACCAAACCAGCTTTAAAATTCTTTAGTATTGTTCTTTATTAAATTTGAATGTAAAcaactacaaataaatatatttgtttaaagtacCATTTGTTTAACTATAatctattatttaaattaaaaggagCATCACAAAATGTTCTGTTATTGTGTTGGTGTAGTTTTTGTCACACTGTAGTAAATTAACTAAAGATAATTCCAAAACAGTCAGCATATCTGTGCATGCAGTAATTACTGTAAACTGTGTTCATTGTACAAGGGAAGGATCATAGTAAAGGATTGTTATTTCAAGATGATGTTTGGCCGCAATCTGAACCTGTTACTTTTTAACACACATGCAATACaatcacacaaatacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017520 False 885 mRNA 0.48 10 8473490 8514803
TU113572 True 1051 TUCP 0.44 8 8496495 8514955

Neighbor

gene id symbol gene type direction distance location
AMCG00017519 clocka,clock,LOC107701480 coding downstream 57011 8387062 ~ 8416479 (-)
AMCG00017516 NA coding downstream 123502 8329147 ~ 8349988 (-)
AMCG00017512 chic2,LOC101486940,LOC103353160,LOC107714214,LOC107562985,LOC102236523 coding downstream 312046 8142440 ~ 8161444 (-)
AMCG00017513 NA coding downstream 431036 8023656 ~ 8042454 (-)
AMCG00017506 NA coding downstream 482050 7989793 ~ 7991440 (-)
AMCG00017524 NA coding upstream 92104 8607059 ~ 8627186 (-)
AMCG00017529 NA coding upstream 148695 8663650 ~ 8677813 (-)
AMCG00017530 ppat,LOC106560282 coding upstream 164858 8679813 ~ 8694359 (-)
AMCG00017528 NA coding upstream 186923 8701878 ~ 8730713 (-)
AMCG00017532 NA coding upstream 257254 8772209 ~ 8780221 (-)
G91016 NA non-coding downstream 91820 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 186373 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 243929 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 308585 8164654 ~ 8164905 (-)
G90964 NA non-coding downstream 311377 8161535 ~ 8162113 (-)
G91064 NA non-coding upstream 88666 8603621 ~ 8605626 (-)
G91294 NA non-coding upstream 1079975 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 1117690 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 1147609 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 1160591 9675546 ~ 9675779 (-)
G90939 LOC105903575 other downstream 476895 7992137 ~ 7996595 (-)
G90937 NA other downstream 640898 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 794140 7668024 ~ 7679350 (-)
G90746 NA other downstream 1284842 6733235 ~ 7188648 (-)
G90749 NA other downstream 1360309 7112436 ~ 7113181 (-)
AMCG00017531 NA other upstream 217805 8732760 ~ 8748743 (-)
G91119 NA other upstream 240333 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1846345 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2989069 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3362405 11877360 ~ 11900600 (-)

Expression


Co-expression Network