AMCG00017584 (wdr1,LOC106565198,LOC106583413)


Basic Information

Item Value
gene id AMCG00017584
gene name wdr1,LOC106565198,LOC106583413
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12506590 ~ 12521063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017584
CTGGTTTGCGACACTAGGCTAGCCGGAGCAGACGTCATTTCCTCGGTAGGCAGGTTGACGCAGGTCTGCTGAGGACTACAGCTGTTCGCGTCGCGGGCGAGTTTACTATATATGGGCACAGCCAAGCCGAGGGAGCGCAGCGCAGGCTTCCGTGTTAGCGCGATCAGGAGAGGCTGGACGAGCCGGTAGACGGGACGCAAGAGAAAGGGAGGcttgtttttccattcattcGGAGGGGATACAAGGTCTGCGAATATGTCCTACGAATTAAAGAAAATCTTTGCTAGCCTCCCTCAGGTGGAAAGGGGTGTTTCGAAGGTGCTCGGAGGGGATCCCAAGGGAAACAACTTTCTGTACACCAATGGAAAGAGTGTCATCATCCGAAACATTGatAATCCAGCCATTGCAGATATCTACACTGAACATGCACATCAAGTGATTGTTGCAAAGTATGCGCCCAGTGGGTTTTACATTGCCTCTGGAGATGTTTCGGGAAAGATCAGGATCTGGGATACTACTCAAAAAGAGCATCTTTTGAAGTACGAGTATCAGCCCTTTTCAGGAAAGGTTAAGGACATTGCCTGGACTGAAGATAGTAAGAGATTAGCAATTGTCGGAGAAGGACGGGAGAAGTTTGGAGCTGTTATTTTGTGGGATACAGGCTCCTCTGTTGGAGAGGTCGCTGGTCACAATAAGATCATCAACAGTGTGGACATAAAGCAAACCCGACCCTATCGCCTTGTGACTGGCAGCGATGACAATTGTGCTGCATTCTTTGAGGGGCCACCTTTCAAATTCAAGTTTACGTTGACTGGCCATAGCCGGTTTGTTAATTGTGTGAGGTTTTCTCCTGATGGGAACAGGTACGCTTCAGCTGGTGCTGATGGCCAGATCTTCCTCTATGATGGAAAAACAGGAGAGCAGATCACTGCGCTTGGTGGTGAGAAGGCCCATGACGGTGGCATTTATGctGTTTCGTGGAGCCCTGACAGTACTCAGCTGCTTTCTGCATCTGGAGACAAGAAGGTGAAGATTTGGGATGTTGGCAGCAACTCTGTGGTGACCACCTTCAACATGGGCTCAGATGTTATGGACCAGCAGTTGGGCTGTCTGTGGCAGAAGAATCACCTGCTGAGTGTTTCTCTGTCTGGTTACATCAATTACCTGGACAAGAACAATCCCAACAGGCCCCTACGTACAATTAAGgGCCACAGCAAATCAATTCAATCCCTGACTGTCCACAAAAGCGATGGAAGATCATACATCTACTCTGGAAGTCATGATGAGACGGGAGAGAATGACGACTTTTCTGGAAAGGGCCATAGCAATCTTGTTTCCAGGATGGTTGTAGATGAGTCGAGCAACTTGGTCACCTGTAGTATGGATGACACTGTCCGTTACACCAGTCTGTCCAAGAAGGAATACAGtgctTCAGACCTGGTGAAGATGGATGTTCAGCCGAAGTGTGTAGCAGTGGGCCCGAGAGGTTATGCTTTGGCTGTTTGTATTGGACAGGTTGTCCTGCTAAAGGACAAGAAGAAATGCTTTACAATGGACAACCTTGGTTATGAGCCAGAAGCTGGAGCTATTCATCCAGGAGGCACCACAGTGGTAGTAGGAGATAATGCAGGAAAAGTGCACTTGTATTCCATTCAAGGCAACACTCTGAAAGAGGATGGGAAGACCATCGAAGCGAAGGGAGCCGTGACTGACATGGCGTATTCCAACGATGGGGCCTTCCTTGCGGTCTCTGATGCACAGAAAGTCATCACCGTCTTCACTGTGGCTGATGGTTATGCAGAAAAGAATGTATTCTATGGGCACCACGCTAAGGTTGTGTGTCTGGCATGGTCCCCAGACAATGAGCACTTTGCCAGTGGGGGCATGGATATGATGGTCTTCATCTGGACAGCCAGTGATGCAGACAAAAGATTGAAGATGCCAGATGCCCATCGGTTGCATCATGTCAGTGGACTGGCATGGTTGGACGAGCACACCATCGTGACGGCCTCTCACGACTGTAGTGTCAAGCAGTGGACGGTCAAATTCTAATCGCAAAAGGTGCACAGATCTTCAGGGACTAGGACTACTGTAGAAGATGGCATTTCTCGAAGTATTTCTGTAATGACTGCTGGTTTCTATACCGTTAACCCTGAGTCATGGCAGGGAGTTCATATCTAaatatgctgtatttttaaagctttagtCAGTAACTATTTGCACGAAGAAGCACTTAACATGATCTCTGGAGCTTTTAAAAATTCTATGCTCAACATTCCAGAGGCAACAGCCTTATCTCGGTTCAATTGAAGAGTAGTCTGTTCACTTCTGTTCTACCAGAGATGTTTGTTAACATTAAATGGAATGGGATTAACTCTTGCCTCGTTGTGTGACTACAGAACATTTCTGTACCATTCAGAATCATAAGTTTGAACGGTAAAcgcaaataaattatatgatttGAAATATTGTGTACACAGTGCGGATCCTGTATTGTTCTGATAACTATGCTCCTGTATCTCACTTTTTTTGTTGCCTCATTTTTTCCTATGGGTGATAATggttcataataaaaaaa

Function

symbol description
wdr1 Is expressed in ectoderm; epidermis; nervous system; and solid lens vesicle. Orthologous to human WDR1 (WD repeat domain 1).

NR:

description
PREDICTED: WD repeat-containing protein 1-like

GO: NA

KEGG:

id description
K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017584 True 2578 mRNA 0.47 15 12506590 12521063

Neighbor

gene id symbol gene type direction distance location
AMCG00017583 NA coding upstream 17421 12472948 ~ 12489169 (+)
AMCG00017585 NA coding upstream 108837 12393280 ~ 12397753 (+)
AMCG00017580 rab28,LOC107717319 coding upstream 328472 12173844 ~ 12178118 (+)
AMCG00017581 rab28,LOC106600633 coding upstream 348349 12148269 ~ 12158241 (+)
AMCG00017576 LOC106589762 coding upstream 375640 12129663 ~ 12130950 (+)
AMCG00017586 NA coding downstream 25306 12546369 ~ 12565088 (+)
AMCG00017592 NA coding downstream 191094 12712157 ~ 12717400 (+)
AMCG00017593 NA coding downstream 200178 12721241 ~ 12727616 (+)
AMCG00017596 msx1a,msx1,LOC107682425 coding downstream 343313 12864376 ~ 12865629 (+)
AMCG00017599 stk32b,stk32a,LOC108414397,LOC108278444 coding downstream 403787 12924850 ~ 12931836 (+)
G91549 NA non-coding upstream 16294 12490083 ~ 12490296 (+)
G91545 NA non-coding upstream 70606 12435744 ~ 12435984 (+)
G91490 NA non-coding upstream 530978 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 570251 11936101 ~ 11936339 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding upstream 570629 11935627 ~ 11935961 (+)
G91597 NA non-coding downstream 186247 12707310 ~ 12710716 (+)
G91619 NA non-coding downstream 344124 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 538793 13059856 ~ 13060646 (+)
G91683 NA non-coding downstream 619599 13140662 ~ 13140878 (+)
G91726 NA non-coding downstream 1001578 13522641 ~ 13526149 (+)
G91452 cc2d2a other upstream 626091 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2923310 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3741687 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3805836 8687697 ~ 8700754 (+)
G90955 NA other upstream 4373736 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 675832 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1260203 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1504573 14025636 ~ 14039063 (+)
G92046 NA other downstream 2556262 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2567069 15088132 ~ 15090829 (+)

Expression


Co-expression Network