AMCG00017796 (LOC105419749)


Basic Information

Item Value
gene id AMCG00017796
gene name LOC105419749
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23633455 ~ 23646547 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017796
CCCTCATTTACTTACATTGAAATCTACAGTGTAGTGTTTGTGGAAACCCCAGTTTAATGCTTGTTTATGCTGCGTTTTTGCGCGCAGGTGAGATGCGCAACCTGAAGCTGCAGAGGAGCCGGGGCTGCTCGGGTCTGCAGGCGCTGGGCAGCCCGCAGTGCTTCTCCCTGCGGACGGACACCGGCTCGCTGCTGGTGGCGTCGGGCCACAGCATCGCAGAGCTCGACCCCCGGGCACAGCAGGTGGTGAACGAGGTGTCTTTGAGTGCGGACAGCTACCTTCCTGAAGATGGCAGTGGCACCATCGTGGGCATCCAGGATTTACCCGACCaggagtctgtctgtgtggctACGGCCAGTGGAGATGTCATCCTGTACAACCTGAGCACTAACCAGcTGGAGTGTGTTGGCAGTGTGGACAGTGGGCTGACGGTGATGAGCTGGAGTCCTGACCAGGAGCTTGTCACTCTCTCCACAGGACAGAATACTATTATCATGATGACAAAGGACTTTGAACCCATAACAGAAGTCCGGATTCACCAAGATGACTTTGGTGAAGGAATGTTCATTACTGTGGGCtggggaaagaaagagacacaATTCCATGGCTCAGAAGGCAAACAAGCTGCCAAGCAAAAGACAACAGATGTCCTGCCTGCTCTGCCCTGGGATGATCACCGACCAAGGATCACATGGAGAGGTGATGGGCAATTCTTTGCTGTGAGTGCTGTCTGTCCAGAGACAGGTGCCAGGAAAGTGAGAGTGTGGAACAGAGAGTGCATTCTGCAATCAACGAGCGAAGCAATAAACGGCCTGGAACAAGCTCTTTGCTGGAAACCATCGGGGAGTTTGATTGCTGCAACTCAGAGGAAGCCCAACAAGCATGATGTCGTTTTTCTTGAGAAGAATGGGCTCCTGCATGGAGAATTCACTCTGCCCCTTGGAAAGGACCAAGCCAAGGTCCGGGAGCTGATGTGGAACTCCGACTCCACGGTGTTGGCCATCTGGCTAGAGGATATGAACTCTGCAGGAGACTCCAAGCCCAGCACCTACATCCAGCTCTGGACTGTGGGGAACTATCACTGGTACCTGAAGCAGAGCCTGCATTTTGGTAGCGACCCACAAAGGGCACCAGTGTTCCTGGCATGGGACCCCGAGGTCCCGTTGAGGCTGCACGTGCTGTGCCGAGGCTGGCAATACCTGTGCTATGACTGGGCGTGGAGCACGGAGCACAGCATGGGGGACGACTTACAGGATGACGCCAACGTAGCAGTCATTGATGGAGACAGGGTGATGGTGACTACCTTCCGGCAGTGTGTGGTGCCTCCCCCCATGTGTACCTATCAGATTCACTTGCCTACAGCTGTCAATCAAGTGACCTTTCACCCAGAGCCAGGGAAGACCAATGACCTGGCTGTGCTCACAGCTGATGACAAGATCATGATTTACAGCAAAGGGGAGAAGAGCCACGAGGACCCAACAGTTAAAGTTGGAGCAGTTGGAGGAAATGGATTTCGTGTTACTGCACAGACCCCCGAACTGAAGGCAACGTACAGCCTGGTGCTGAGGGAGGGGGTGGAGCCCCTGGGTTTGAGGCTTCTCACCTGGCTGAGGGACGACTCCTTCCTGGCCGTGAGCAGCGGGGAGGGGCCCTCTCAGAGCCGCCTGCTACTCCTCAGGCCTGCCGGGGTCGAGGGCCTCCCGCACAGCCTGGAGATCAGGTCATCAGTCCCAGTGGAAGGCCATGTGATCACCATGTGCTACAGACAGAAGACGGGGACTGTGGCCCTACAGCTGGAGGACGGCCAGATCAGGAAGTTCCTGTGGGAGTCGTTGGAACCTTGTATTGTGGAGTGGCGAGATGATGCTGGCCGCTCCGTCGGCTTCCCTCAGCCCTGTGTGCAGACAGCCTTGTGCACGGTTGCTGGGGAGGAGCAGTTATTGGGGCTCACTGACAGATCACGCCTTTTCATTGGTGATACAGAGcttGCCTCAAACATCTCCTCTTTTGTTCTGTATGACGACTTTCTCCTGCTTACAACCCACTCACATACGTGCAGGTGCCTCAGTTTAAATGAAACCTCAGTTAAAGGGCTTCAGTCTGCGCTGAGTTGTGAATCTGGGCAGAACGATGAGACACTGCGCCGCGTGGAGAGAGGCTCCTGTATCATCACGGTCATCCCTCAGGACACCAGGCTGGTCCTGCAGATGCCTCGAGGGAACCTTGAAACCATCCATCACAGAGCGCTGGTCCTTGCACAAGTCCGGAAGTGGTTGGACAGACAGAGTTATGGTCATGCAGTTCTGTGCTTCTTGTACTTCTCTGCATATGTGTTTTTAGACCATGTGGAAATGTTCTTGAAGCAAATTGACTCTATAAACCATATCAACTTGTTTCTGACAGAGCTCAAGGAAGAAGATACCACCAAGACAATGTACCCTTGTCCTTCAAACAGTACTGCCCAGATGGCCCCGGTGCCTTCTGGGAAGAAGGTGGACCTTGTGTGTGATGCTATGAGAGTAGCTATGGAAAACATAGATCCTCACAAATACTGTTTATCTGTTTTAACTTCATATGTGAAAAAAAGCATTCCAGAACTGGAAATTGCACTACAGAAGGTCCATGAACTTCGAGTGAACCCCCCTAGCGTGGCCGGAGCAGTGAGTGCAGAGGAGGCCCTGAAGTACCTGCTGTTCCTGGTCAATGTCAACGAGCTCTACGAGCACTCGCTGGGCACCTACGACTTTGACCTGGTCCTCATGGTGGCAGAGAAGTCCCAGAAGGACCCCAAGGAGTATCTACCATTTCTAAACACCCTGAAGAAAATGGAACCCAACTATCAGCGATACACCATCGACAAGCACTTGAAGAGATACAGAAAGGCTTTACAGCATCTGAGCAAGTGTGGCCAAGAACACTTCACAGAATTTTTAAACCTAGTTAAGGACCAAAAGCTGTATAATGAGGGCCTAAGGCTATATACCTCAGACAGCCCACAGTACAAGgcgATCAGCTGTGCCTACGCCGAGCACCTTCTGGAACAGCAGTTCCCCGAGCAGGCCGGCCTGCTCCTATCCCGCTGCGGGGAGAAGCTCAGGGCGCTGGAGGCCTTCGTGACCAGTACCAGCTGGCAGCATGCCTTCTGCATGGCTGCCCGGCTTCACTTCACCCCAGACAAGCTGGCCGACCTGGCACGCACTCTGGCAGGGAAACTGGACTGTGAGGAAGCCATCTTGGCTCTGATTGAGGGGACGGCCTGGGAGGAGGCTTTGAGACTGGTTTATACACATGACAGACAGGACATACTGGAAACCAATCTGAAGCCTGCTCTGCTGGAAGCTCACAGTAATCAGATATCCTTCCTGGATTCTCAGAGGACCTTGTTCATACGCCATAAATCTCGCTTAGCTGTTGTGCGAGAGCTGAaagaaaaagccagactggagcTCTTAGATGAGGACGCCCCGGACTGCCCCGATGCAGAGCTGTTCTCAGAGGCGAGCAGCATGATGACAGCTGGCAACACGGGCTCCAAATACTCCCACAGCAACTCCCGAATCTCAGCGAGATCCTCCAAGAATCGTCGCAAGGCCGAGCGCAAGAAGAACAGTCTGAAGGAGGGGAGTCCCCTGGAGGATGTGGCGCTGATCCAGGCCCTGAGTGAGATCATCCACACCACGGACAAGATCACAGATGAGGTGAACAGCCTGCTGAAGGTGCTGGTGCTGTTTGGCTATGATGGGCAGGccctgcagctgcagcaggacTATGAGGAAACACTGCAGCTGATGGATAAAGCCATACCTGAGATCTGGCAGGATGGCCTCCAGCAGAGCAGCACTCCGGTCCTGGGTCCCAATTCAACAGCAAACAGCATAATGGCTTCCTATCAGCAGCAAAGAGCCCCTTCAGTACTACAGCAAGAGGCAGAGCTCTTAATTCCTCCGAAGATGAAAAAGAATTTCAAATGGAAGCTCCGGCTTCTGCAGTAGATTCATGCTGTACAGTTGTATCCAGTACCTTTTAAAGAAACGTTAcccacatttgtattttaagaaaaaataaactgaaatataaataaaatatttagaaacttg

Function

NR:

description
PREDICTED: elongator complex protein 1-like, partial

GO: NA

KEGG:

id description
K11373 ELP1, IKI3, IKBKAP; elongator complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017796 True 4097 mRNA 0.53 36 23633455 23646547

Neighbor

gene id symbol gene type direction distance location
AMCG00017795 dnaja1,LOC106591825,LOC108431796 coding downstream 6037 23617680 ~ 23627418 (-)
AMCG00017792 NA coding downstream 114429 23468839 ~ 23519026 (-)
AMCG00017791 NA coding downstream 168692 23458927 ~ 23464763 (-)
AMCG00017790 NA coding downstream 176439 23445924 ~ 23457016 (-)
AMCG00017788 NA coding downstream 203242 23423691 ~ 23430213 (-)
AMCG00017807 NA coding upstream 25097 23671644 ~ 23690436 (-)
AMCG00017805 NA coding upstream 103824 23750371 ~ 23760237 (-)
AMCG00017808 NA coding upstream 149366 23795913 ~ 23812448 (-)
AMCG00017806 LOC108277608 coding upstream 175187 23821734 ~ 23840163 (-)
AMCG00017804 NA coding upstream 211291 23857838 ~ 23863656 (-)
G93173 NA non-coding downstream 93335 23444211 ~ 23540120 (-)
G93165 NA non-coding downstream 303711 23326525 ~ 23329744 (-)
G93159 NA non-coding downstream 337209 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 338086 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 342774 23290332 ~ 23290681 (-)
G93324 NA non-coding upstream 261028 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 388149 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 397647 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 654873 24301420 ~ 24301980 (-)
G93434 NA non-coding upstream 858835 24505382 ~ 24505610 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 311501 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 3274830 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 4214099 19412987 ~ 19419356 (-)
G92436 NA other downstream 5170279 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5843706 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 618132 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1299548 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1350997 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2298594 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2365941 26012488 ~ 26015942 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_01511690_01517631 IKBKAP coding CI01000000 null 1511690 ~ 1517719 (+)