CI01000000_01511690_01517631 (IKBKAP)


Basic Information

Item Value
gene id CI01000000_01511690_01517631
gene name IKBKAP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1511690 ~ 1517719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01511690_01517631.mRNA
ATGAGAAACCTCAATCTGCTGCAGCGCTTGAGATGTGTGGATCTTCCAATCCCGGGATCCCCACAGTGTTTCTCCATCAGAAGCGAGGCTGGAACAGTGCTGGTGGCCTCCGAACTTGCCATCACAGAGTACGACCCACGGAGCGGAGAGATTTATAAAGAGGTTTCACTGACGACAGATGACTATCTCCCAGAGGATGGTAGTGGACTTGTAGTAGCGATACAAGATCTGCCAGATCAGGAGTCTGTGTGTGTGGCCACTGCCAATGGTGATGTCATTCTCTACAACCTCAACACCAGTCAGTTGGAGTGTGTTGGCAGTGTGGACAGTGGTCTAACCGGTATGACTTGGAGCCCAGACCAGGAGTTGGTGACTCTGACCACAGGTCAGGAGACCATTATCATGATGACCAAGGACTTTGAGCCAATAACTGAGGTTGCAATCAATCAGGATGACTTTGGCGAAGATAAGTTCATCACAGTTGGTTGGGGGAAGAAAGAGACTCAGTTTCATGGCTCTGAAGGCAAGCAGGCTGCCCAGCGCAAAGCAGCAGAAGTGCAGCCTGCCCTGCCGTGGGACGACAGGAAGCCAAGAATCACTTGGCGTGGCGATGGGCAGTTCTTTGCCGTCAGTGCTGTTTGTCCGAATACTGGTGCTCGAAAGGTTCGCATCTGGAACCGAGAATGTGTCCTGCAGGCCACCAGCGAGGTCGTTAACGGTCTGGAACATCCGCTCTGCTGGAAACCCTCTGGCAGCCTGATCGCTTCCACACAGCGGCACCCGAACAAACACAGTGTGGTGTTTATGGAAAAGAACGGACTGTTGCATGGAGATTTTACTCTGCCTTTTGGAAAGGACCGGGTCAAGGTGAAGGAGCTGCTATGGAACAGTGACTCTACTGTACTGGGTGTTTGGATGGAGGACTTGAAGCCCGGAGAGAACACTCCCAACACATACATTCAGCTGTGGACGGTTGGGAATTATCACTGGTATCTGAAGCAAAGTTTGCATTTCGGCAATGAGCCCCTTAGGGCTCCAGCATGTGTGTGTTGGGATCCGGAGAAGCCCTTGCGTCTCCACCTCCTGACTCGAGGATGGGCCAGCTACACCTACGACTGGGGCTGGAGCACTCAGCGCAGCCATGGCAATGATTGCCATGACAATGCCAATGTGGCAGTGATTGATGGAGATAAAATTCTCGTGACAACATTCCGCCAGTGTGTGATCCCTCCACCTATGTGTGCATTTGAACTTCAACTTCCTGTTCCTGTCAACTTGGTCACCTTCCATTCTAAAGCCCAGAGGACCAATGAGCTTGCAGCTCTCACAGCCGATGGGCATATTTATGTATACGGTGAAGGTGGTGGAGTTGAAAATGGAGGTGTACCCAGAGTTCCTGGCTTTAAAGTCATCTCCGCACCATTAGTCTTAAGAAAGACATACAGGGTCGCCGTGGATCAGGGAGAACCTCTGACGCTGTGCTTGCTGCTGTGGTTGAGTGAAGATTTGTTTTTGGCTGTGACCCACAGAGGAAGCTTGACACGCCTGTTGAAACTCACCCCATCAGACAGCCAGGACCCCAAGGACACGCTGGAGATCAGGTCAGAAGTTCCTGTGGATGGTCATGTGATCAGCTTATGCCACAGCCTCAGAAATGGCACTGTGGCCCTGCAACTTGAAGATGGACAGATCCGGAAACTTCTTATGGGTCAGTCAGTTCACTAATTATGACAGGAACTGGAATTGGCTACTACACAATTTATGTTTAATCACTTGTCTTTTTTTTTTTTTTATGTAATTTGAAAATACATAA

Function

symbol description
ikbkap elongator complex protein 1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11373 ELP1, IKI3, IKBKAP; elongator complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01511690_01517631.mRNA True 1813 mRNA 0.50 14 1511690 1517719

Neighbor

gene id symbol gene type direction distance location
CI01000000_01459294_01485147 SLC44A1 coding upstream 26379 1459294 ~ 1485311 (+)
CI01000000_01405606_01410241 NIPSNAP3A coding upstream 101187 1405606 ~ 1410503 (+)
CI01000000_01347674_01352321 NA coding upstream 158462 1347674 ~ 1353228 (+)
CI01000000_01209256_01229839 NA coding upstream 281331 1208489 ~ 1230359 (+)
CI01000000_01196208_01208022 CLK4, CLK4A coding upstream 303333 1196208 ~ 1208357 (+)
CI01000000_01680507_01690297 CPLX2, CPLX1, CPLX1.L coding downstream 162788 1680507 ~ 1691194 (+)
CI01000000_01848610_01851296 NA coding downstream 329824 1847543 ~ 1851898 (+)
CI01000000_01879407_01879559 NA coding downstream 361688 1879407 ~ 1879980 (+)
CI01000000_01898604_01899281 NA coding downstream 380323 1898042 ~ 1899281 (+)
CI01000000_01899373_01901550 TSTD2 coding downstream 381654 1899373 ~ 1901682 (+)
G428 NA non-coding upstream 21343 1487224 ~ 1490347 (+)
G520 NA non-coding upstream 107556 1403153 ~ 1404134 (+)
G503 NA non-coding upstream 117070 1394342 ~ 1394620 (+)
G517 NA non-coding upstream 119306 1391396 ~ 1392384 (+)
G576 NA non-coding downstream 189051 1706770 ~ 1706985 (+)
G593 NA non-coding downstream 215528 1733247 ~ 1734389 (+)
G579 NA non-coding downstream 250198 1767917 ~ 1908808 (+)
G645 NA non-coding downstream 324603 1842322 ~ 1843168 (+)
G699 NA non-coding downstream 401013 1918732 ~ 1918942 (+)
G435 NA other upstream 78836 1425121 ~ 1432854 (+)
G350 NA other upstream 834753 671842 ~ 676937 (+)
G252 NA other upstream 1004618 503209 ~ 507072 (+)
G2774 NA other downstream 2936059 4453778 ~ 4454232 (+)
G2850 NA other downstream 3208267 4725986 ~ 4726482 (+)
G6811 NA other downstream 8687112 10204831 ~ 10321679 (+)
G6820 NA other downstream 8909504 10427223 ~ 10433018 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017796 LOC105419749 coding CM030131.1 CM030131.1 23633455 ~ 23646547 (-)