CI01000000_01459294_01485147 (SLC44A1)


Basic Information

Item Value
gene id CI01000000_01459294_01485147
gene name SLC44A1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1459294 ~ 1485311 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01459294_01485147.mRNA
AGGACAAAAAGAGAATGGAAACCTTTGGAGGACCGAAGCTGCACGGATCTGCCATGGTTCCTGTTATTTACATTGTTCCTTGTGGGAATGTGTGGCATCTGTGGGTTTACCATCGCGACTGGAGGGGCGGCGCGGCTCGTCTTCGGGTATGACAGCTATGGGAACACATGCGGCCAGCGCAATGAGCCCATCGAAGGGGTCCGGCTGAGCGGTCTCGACCATATTGACAGAAAATTCGTCTTTTTCCTGGATCCATGCAACATAGACATCATTCAGAGGAAGATTAAGTCCTTGGCACTGTGCGTGTCACAATGTCCCACCGAGGAACTGGCGACTTACTACGACCTCAAGAGGTTTGCCATGATGAATGGGTCTGAGCTTTGTTCGTACGAGTTACCTGGTCATAAGTACCCACAACTTCCCGAGCGCTTTGATAAGTGTCCCAAACTTCCAGTACCTGAGAGCAAAGCTCTTCCAGTGTTTAACCGCTGCACGCCAGTGGATATCTCCTGCTATGCTAAGTTTGCTGAAGCGGTGGTCACGTTTGTCAGTGATAACAGCATGTTAAACAGGCTGATTGCCGGGGTGGCGGCCAGCAAAGAGATCATTGTTGGGCTGTGTCTGCTGGCGTTAGGAGGCACCAGCGTTTTGTGGTGGTTATATATAGACTACAGAATGACGATGAATGAGACCATGTCTAAGGATCTGAGGGAAACAGAAGAACCCAATGGTGGCATGAAGACCCCCAAAGATCATGCTCAAGGACTGCTCATCTATGCAGTTTCAGCGACTGTGTTCACTGGGATTTTGTTGCTTCTGATGTTGTTTATGAGGAAGAGGGTTGCCCTGACCATCGCCCTGTTCCACGTGGCAGGAAAAGTATTTATCCACCTGCCGCTGTTGGCACTGCAGCCCTTCTGCACCTTCCTCGCTCTTTCTCTGTTTTGGGTCTACTGGATCATGGTCCTCCTCTTTCTCGGCACCACTGGGAACCCGGAGAAGAATGAGGATACTGGCGTGGTTGAGTTCAGGCTCACAGGAGCGCTGCAGTACATGACCTGGTACCACGCTGTGGGACTGATCTGGATCAGTGAGTTCATCCTGGCCTGTCAGCAGATGACCGTAGCCGGTGCTGTGGTAACCTACTATTTCACAAGGGACAAAACCAAACTCCCGGTGACTCCCATCCTGTCATCAGTGCTGCGGCTGGTGCGGTATCACCTGGGCACTGTGGCCAAGGGCTCCTTCATCATCACCCTCGTCAAGATCCCACGCCTCATTCTCATGTACATCCACAACCAACTCAAAGGCAAGGTCCTGATCGTGACGTGCACGGCATTCGCTGGGGTGTTAGCGCTGAACTATCAGAGAGATTACACCGAGTGGGTCCTGCCGCTCATCATCGTGTGTCTGTTCGCGTTCCTGGTGGCACACTGCTTCCTGTCCATCTTCGAGATCGTAGTGGACGTGCTCTTCCTCTGCTTTGCCATCGACACCAAATACAACAATGGCACACCTGGGAGGGAGTTCTACATGGACAAGGCCCTGATGGAGTTTGTGGAGAACAGCAGGAGGTCAATGGCGATGGAGGAGCGGGGGCGCAGCAAGCGCGCCCGTCCCAAGGAAGAGGTAGAGTTGACGGAGGTTAAGGCCATGGTGAGTGGTGACGTGGGTGTGGCAGGGCCGGAGTGGCAGGACTTACAGGAGTTCCACCTGTACTATCTGCTGCTGTGTGTGCTGCTGGACTGGGCCCTGACGGAGCACAATCTGGTGCTCTGCCTCACACAAGACATGATCATCTTCCTGTCTGTCTGCCTGCCCACCTCCACCCTCTTCTTCTTGGTCACATTGCTCCAGAACATACCGGTTGCTGTTGCTGCATGCTGACTAACGCTTCCTCACCTCCTTCTATCATTTCATCCATCTTTCTATGCATCGCACAGTGCATGAGCATTTTTTATCAGTGGATTATTATTATTTTTTTAATCTTTTTTTCATTCCATTCTTGCCTCTTCTTTTTTTACTGACTGTCTTGAACTCATATGGCGGCT

Function

symbol description
slc44a1 Enables choline transmembrane transporter activity. Involved in choline transport and transmembrane transport. Located in several cellular components, including cytosol; mitochondrion; and nucleoplasm. Implicated in high grade glioma.

GO: NA

KEGG:

id description
K06515 SLC44A1, CD92; solute carrier family 44 (choline transporter-like protein), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01459294_01485147.mRNA False 2051 mRNA 0.52 11 1459294 1485311

Neighbor

gene id symbol gene type direction distance location
CI01000000_01405606_01410241 NIPSNAP3A coding upstream 48791 1405606 ~ 1410503 (+)
CI01000000_01347674_01352321 NA coding upstream 106066 1347674 ~ 1353228 (+)
CI01000000_01209256_01229839 NA coding upstream 228935 1208489 ~ 1230359 (+)
CI01000000_01196208_01208022 CLK4, CLK4A coding upstream 250937 1196208 ~ 1208357 (+)
CI01000000_01176488_01180221 4EB3L, 4EBP, EIF4EBP3, EIF4EBP3L coding upstream 279025 1176450 ~ 1180269 (+)
CI01000000_01511690_01517631 IKBKAP coding downstream 26379 1511690 ~ 1517719 (+)
CI01000000_01680507_01690297 CPLX2, CPLX1, CPLX1.L coding downstream 195196 1680507 ~ 1691194 (+)
CI01000000_01848610_01851296 NA coding downstream 362232 1847543 ~ 1851898 (+)
CI01000000_01879407_01879559 NA coding downstream 394096 1879407 ~ 1879980 (+)
CI01000000_01898604_01899281 NA coding downstream 412731 1898042 ~ 1899281 (+)
G520 NA non-coding upstream 55160 1403153 ~ 1404134 (+)
G503 NA non-coding upstream 64674 1394342 ~ 1394620 (+)
G517 NA non-coding upstream 66910 1391396 ~ 1392384 (+)
G516 NA non-coding upstream 68636 1390435 ~ 1390658 (+)
G515 NA non-coding upstream 69704 1389309 ~ 1389590 (+)
G428 NA non-coding downstream 1913 1487224 ~ 1490347 (+)
G576 NA non-coding downstream 221459 1706770 ~ 1706985 (+)
G593 NA non-coding downstream 247936 1733247 ~ 1734389 (+)
G579 NA non-coding downstream 282606 1767917 ~ 1908808 (+)
G645 NA non-coding downstream 357011 1842322 ~ 1843168 (+)
G435 NA other upstream 26440 1425121 ~ 1432854 (+)
G350 NA other upstream 782357 671842 ~ 676937 (+)
G252 NA other upstream 952222 503209 ~ 507072 (+)
G2774 NA other downstream 2968467 4453778 ~ 4454232 (+)
G2850 NA other downstream 3240675 4725986 ~ 4726482 (+)
G6811 NA other downstream 8719520 10204831 ~ 10321679 (+)
G6820 NA other downstream 8941912 10427223 ~ 10433018 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007687 NA non-coding NC_007125.7 CM002898.2 6330241 ~ 6402769 (-)