CI01000000_01209256_01229839


Basic Information

Item Value
gene id CI01000000_01209256_01229839
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1208489 ~ 1230359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01209256_01229839.mRNA
GCATATATGGGTCTGATTTAGTAATACAATCGGGAAGGGAGCCTTCAGTAGATCTGACCCACCTTAGAACAGTCAAAACATGGTTTGGGGTAATGATTTTTAAAAGTTACATTTATAAAATATATACAATGGTTTTCAAATGTTTTACAATGCACAAAAGTTACAGAAATCGCATTCGCCTGAGGAGGAGGAGGTAACCACTGTTATAGTCAACGTAAGAAAACATTGACAAAACACAAATATTCACATTATTTGTCTATTATAGATTTACATTTTACAAATATATGGCAGAAAAAAAGTTTAAAGATAGTTTGAATAACTGAAATGTTTCGCTCCAGTCGCTCCACGAAAAATTGTATTATGCTCACGCCAACGTGTGGAGAAAACAACCTGAAATAGAGAGAATCTCACGCAGATTGTTCACAGCTGCTTCTGGCTGCTCTCTGGTTATTCCAGCACCTTGTTTCACGCTCGTTTCAACCCACACACACCACGCTGAATGTCAGGGGGCTGCATGTGTCTTAATACCCAATGAGCACCCTACCTAGATAGCATTCCTTTGCATCGAAGGCGCGCGCAACATTTTTGGCCATTTGAGAATCGTTGAATCGCAGCTCAGCTTACTAGGTTTTGAAACACAGCCATGCTGTTCAAAGCCCTGTGTGCTGTTCAGCGCTGCTCAGTCTGACAGCTACATCTCATCGATCAAGAACTGATCGATACTTAAGTGATATAACTATTGGAAACTAATCGGATACTTTGTCAGAATGGATCCATCTGCGGAAAGAAATACAGAAAGCAAACAGAATGCTGCGAAACCGCTTTATCTGCGCTATTTAGTGTCTTTTCCAACCATAGTGTGTTTAGTGATATCGCTGAGTTCAATAGCGGTGTGCTTTCTCATGACTTTTAAAACGCATCAGATGGAGAGCAGGCTGCGCGCGCTGGAGATAAAGATGAGTGACATCTGTCAAGAGTCATCTGTGGACGTCTCTGTTTCACAGGAACTTCGGGAATCCATTGAAACACTCTTACAAGAGGCAAGCATTTTATCCTTTATAAAAAAAAGCTGCAACATCATCCAAAATGTTTCTTTTACTGTTTCACATGTTTCTGCAAGGCTGAATGAAGCAATGCCAAAGTTGCGTGTGGCTAGAGACGTGACACAAGACTGCAACTGTCCTCCAGTGCCGCAGAAGGCCCAACAGAGGCACCGAACTGTAAGCATTGAACACATACCCTCAGGGCCTCCTGCAGCCCTCACTGGACAATTAGACCGATGCAACACCCCCTCCATTTCCCCCCGCACCCCTCCCCAACCCAATAACCCGCTGTCCTCACCCCACTCTCCGCTCTTTAAGGACCAGACCTCCATCAGCGCACAGGCTGTATCAGATGACCTCATTACCCTGGCCTGTCCTCTAAGGATTCAGCTACTGCTAACTGTCCATCAGCAGTTCACCATTTACTGCCCTAATAGTGCTGCGTGTGAGACAGCGGCAGTGCAGTCCAGTCCAGCTGGCCGGTGCTTATGTCATTGCCGGAATGTCAAGGTCACTCACTATCAGGCCTCTGTTGCTCCTTGTTTGGACTATTTTAAATTGATTGTCAGGATTAAGATACGTCTCATTTCAACCACTGCAAACAAGAATCTCATTTCTAACTTTAGCATTCAAAAGCTAGCGTACATTTAGACTACACCCGGGGTTTAATTTAAACTTGTTAAACCTGTCACACGCTGACTGGTGCTGGAAATGAGTGTGGATCATCACCTCCAGGGTCGGAGGGAACAGTCACGAAACGGATTACGGAAGTCTGAGACCCGACAGCCGTCAGTCCCTAAGGGAGATTAGAAAGATCCAAAGGTGGCGGCCCGGACAGGAATCTGACACAGCAGGGAAATGATGAGGGGGGGTCTGTGCTGGTCGTCACAGCATGAGATTTTAGGAATTAACGTATGCTGTGACGTTACTATAGTCCTCTTCTTCCTACTGGGTATCAAATATTTAACTGCTTCTCCAGTGACTGACAGTGTAGCACCTGATGGTAAATATATAAATGAGCTCAGTTTAGTATGCAGTGGCCGTGGTTGATGACAGCTATAGTGGGATAAAAATATGTAAAGAACTCGCTGGATTTAACACTGACTGTATGTACAGAAAGAATAGACAGGCTTTTATGCCCATGTGATTTCTGAACCATTCTTTTAGCTAA

Function

NR:

description
hypothetical protein EH28_16219

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01209256_01229839.mRNA True 2214 mRNA 0.44 5 1208489 1230359

Neighbor

gene id symbol gene type direction distance location
CI01000000_01196208_01208022 CLK4, CLK4A coding upstream 132 1196208 ~ 1208357 (+)
CI01000000_01176488_01180221 4EB3L, 4EBP, EIF4EBP3, EIF4EBP3L coding upstream 28220 1176450 ~ 1180269 (+)
CI01000000_01149697_01163047 RUFY1 coding upstream 44509 1149697 ~ 1163980 (+)
CI01000000_01105760_01112812 NA coding upstream 94537 1105760 ~ 1113952 (+)
CI01000000_01100131_01102607 NA coding upstream 105765 1100131 ~ 1102724 (+)
CI01000000_01347674_01352321 NA coding downstream 117315 1347674 ~ 1353228 (+)
CI01000000_01405606_01410241 NIPSNAP3A coding downstream 175247 1405606 ~ 1410503 (+)
CI01000000_01459294_01485147 SLC44A1 coding downstream 228935 1459294 ~ 1485311 (+)
CI01000000_01511690_01517631 IKBKAP coding downstream 281331 1511690 ~ 1517719 (+)
CI01000000_01680507_01690297 CPLX2, CPLX1, CPLX1.L coding downstream 450148 1680507 ~ 1691194 (+)
G416 NA non-coding upstream 13174 1190949 ~ 1195315 (+)
G446 NA non-coding upstream 35134 1171527 ~ 1173355 (+)
G466 NA non-coding upstream 91137 1117115 ~ 1117352 (+)
G424 NA non-coding upstream 109718 1089793 ~ 1098771 (+)
G479 NA non-coding downstream 18191 1248550 ~ 1248813 (+)
G480 NA non-coding downstream 22437 1252796 ~ 1253069 (+)
G483 NA non-coding downstream 24681 1255040 ~ 1255303 (+)
G499 NA non-coding downstream 73498 1303857 ~ 1304057 (+)
G449 NA non-coding downstream 131684 1362043 ~ 1363359 (+)
G350 NA other upstream 531552 671842 ~ 676937 (+)
G252 NA other upstream 701417 503209 ~ 507072 (+)
G435 NA other downstream 194762 1425121 ~ 1432854 (+)
G579 NA other downstream 585094 1767917 ~ 1908808 (+)
G2774 NA other downstream 3223419 4453778 ~ 4454232 (+)
G2850 NA other downstream 3495627 4725986 ~ 4726482 (+)
G6811 NA other downstream 8974472 10204831 ~ 10321679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007691 si:ch211-266k2.1 coding NC_007125.7 CM002898.2 6928500 ~ 6931889 (-)