CI01000000_01405606_01410241 (NIPSNAP3A)


Basic Information

Item Value
gene id CI01000000_01405606_01410241
gene name NIPSNAP3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1405606 ~ 1410503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01405606_01410241.mRNA
CGAACTTAAACGATACATTTCGGCTTCCGTACTGGCTCTGAGTGAGCTTCGTTCAAGGCTGCACGTCTTATCTAGCACGTCAGTCACGCTGCGGGTACGGTTCCAGATTCACATCGAGAAAAATGATACAATTACGCGCTATTTACCGGAAAGCGTTACGTCACGCAGAACACTTTCTGTCTGTGAAAAACCGACTTACGTTTGTTTTACATTTGACAAGCAGCCCAGGGCATCAATCTTCACCGGACCGCAGCAGCAGCATGAAACCTTCTATGAGTTCCGCACATATAACATCCAGCCGCATCTCAACGCTGCCTTCCTCAAACTGACCAATGAGAAGATCCAACTGCGTACAGCCCACTCAGAGCTCATCGGATACTGGAGTGTGGAATATGGGGGTCTCAATCAGGTTTTCCACATCTGGAAGTATGACAGCTATGCCCAGCGTGCATCTGTGCGGGCAGCCCTGGCTCAGGACCCCAGCTGGATTGATCAGTACATCTCTAAAGCGATGCCCATGCTGAGCTCTCAGCATAATGAGGTGACGTACCTCGTACCCTGGAGCAAACTTCAGAAGCCACCCAAAGATGGAGGAGTTTTCGAGCTGGCCACCTTCCAGATGAAGCCGGGCGGTCCGGCGGTGTGGGGTAAGGCATTTCAGGCAGCAGTGGGCACCCACATGGGATCAGGATACGCCCACTCAGTTGGGGTTTTTCACTCTGAATTTGGACAGCTCAATCAATTGCATGTTTTATGGTGGTATGAGAGTGCAGACCAGCGGGCAGCAATACGCCATAAATCTCATGGAGATGCCAGAGTGGTGGCGGCAGTAAGGGAGAGTGCAGCGTACCTGGTGTCACAGAAGAACAAACTCATGTTCCCCTGTTCTTTCTCACCAATCAAATAACATGACCTCATGGTTTGACTTCAAAATCAGGGAAATGTGGAGTGAGATTTCATTTATGCAAAATGTAAATGAAATAAGTGGACTGATAAACTGATTTAATAGCAAGTTCCTTTAAGTTTTTGCAGATGATCAAATAATGATTGTGGGTCAAAATAATGCTTTGCATCACATTAAGACTAAAAACACTAGTTTATCAAGTTAATCAAGTCTTAAGATAATTAAGATATTAATCATTAGTGTTATGCAAAATTTCTTATCAACA

Function

symbol description
nipsnap3a Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; intestinal bulb primordium; and optic tectum. Orthologous to several human genes including NIPSNAP3A (nipsnap homolog 3A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01405606_01410241.mRNA True 1169 mRNA 0.46 6 1405606 1410503

Neighbor

gene id symbol gene type direction distance location
CI01000000_01347674_01352321 NA coding upstream 52378 1347674 ~ 1353228 (+)
CI01000000_01209256_01229839 NA coding upstream 175247 1208489 ~ 1230359 (+)
CI01000000_01196208_01208022 CLK4, CLK4A coding upstream 197249 1196208 ~ 1208357 (+)
CI01000000_01176488_01180221 4EB3L, 4EBP, EIF4EBP3, EIF4EBP3L coding upstream 225337 1176450 ~ 1180269 (+)
CI01000000_01149697_01163047 RUFY1 coding upstream 241626 1149697 ~ 1163980 (+)
CI01000000_01459294_01485147 SLC44A1 coding downstream 48791 1459294 ~ 1485311 (+)
CI01000000_01511690_01517631 IKBKAP coding downstream 101187 1511690 ~ 1517719 (+)
CI01000000_01680507_01690297 CPLX2, CPLX1, CPLX1.L coding downstream 270004 1680507 ~ 1691194 (+)
CI01000000_01848610_01851296 NA coding downstream 437040 1847543 ~ 1851898 (+)
CI01000000_01879407_01879559 NA coding downstream 468904 1879407 ~ 1879980 (+)
G520 NA non-coding upstream 1472 1403153 ~ 1404134 (+)
G503 NA non-coding upstream 10986 1394342 ~ 1394620 (+)
G517 NA non-coding upstream 13222 1391396 ~ 1392384 (+)
G516 NA non-coding upstream 14948 1390435 ~ 1390658 (+)
G515 NA non-coding upstream 16016 1389309 ~ 1389590 (+)
G428 NA non-coding downstream 76721 1487224 ~ 1490347 (+)
G576 NA non-coding downstream 296267 1706770 ~ 1706985 (+)
G593 NA non-coding downstream 322744 1733247 ~ 1734389 (+)
G579 NA non-coding downstream 357414 1767917 ~ 1908808 (+)
G350 NA other upstream 728669 671842 ~ 676937 (+)
G252 NA other upstream 898534 503209 ~ 507072 (+)
G435 NA other downstream 14618 1425121 ~ 1432854 (+)
G2774 NA other downstream 3043275 4453778 ~ 4454232 (+)
G2850 NA other downstream 3315483 4725986 ~ 4726482 (+)
G6811 NA other downstream 8794328 10204831 ~ 10321679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location