CI01000000_01196208_01208022 (CLK4, CLK4A)


Basic Information

Item Value
gene id CI01000000_01196208_01208022
gene name CLK4, CLK4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1196208 ~ 1208357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01196208_01208022.mRNA
TAACTAAATCAGGCCAGTGTACAGTAGTACAACCCAGCACTTGTTTCTTGCGCGCCCCTGTATGCGTGCACGCGCCCTCTGGATCCGATGATGACTGCAATTATTCAGGAGACTTTCTTAAACCAGATGAGACAATCGCAGAGAATGCGCTCTCCCTGGCTGAGAGAGATGAGATTGTGTGCACACTCGGAGAGGGAGCCTTTGGCAAAGTGGTGGAGTGCATTGATCATACAAAGGGAGGAGCACGCATTGCGTTGAAGATCATTAAAAACATTGATCGCTATCGTGATGCAGCTCTGTCTGAGGTTGAGGTGCTGGAGCAGATTAACTCACTTGACTGTGACAGACGATATGCTTGTGTGCGGATGTATGACTGGTTTGATCACCACGGGCACGTCTGCATTGCCTTTGAGCTGCTGGGCTTGAGCACGTATGATTTTCTGAAGGAAAATAACTTTCAGCCCTTCTCTATCAACCACATCAGGCACATGGCCTACCAGATCATCAGAGCAGTCAGATTTCTTCATAAGAATAAGCTGACACATACTGACCTGAAACCAGAGAACATCCTCTTTGTTAATTCAGAGTATGACATCAAGTACAATTCGAAAATGAAGAGGGATGATAGAACTCTGAAGAATCCTGATGTGAAAGTAGTTGATTTTGGGAATGCAACATATGAACATGAGCATCATACATCTGTGGTGTCCACACGACATTACCGAGCTCCAGAAGTTATTCTGGATCTGGGCTGGAGTCATTCCTGTGATGTGTGGAGTGTGGGATGCATTCTTATTGAGTATTATCTGGGATCGACTCTGTTTCAGACACATGACAGTAAAGAGCATCTGGCCATGATGGAGCGAGTGCTGGGCCCCATACCTACCCACATGCTGCAAAAAACAAGGAAGACCAGGTATGTTCGTCATGATAAACTGGACTGGGACATTCACAGCTCCTTGGGACGTTACGTCAGGAAGCAGTGCAAGCCCCTGAGACAATACTTGGTCTCCAGTAGCTCTGACCATGAGCAGCTGTTTGATCTCATAGAGAGGATGCTTGAATATGATGTCACAAAGAGGATTACAATGGATGAAGCCATCAAACACCCTTTTTTCAACTGTATCAAGAAGAGCAAGAAATAATTTCTGTCCTTTTGCTGTAGTTCCTCTCTGAGAGAGGCTGTTTCAGTTGACTGTATCAGTCCTCTGTATAGATCATACACTGCTCTTTTCTCATTGTTTATATTTATTGTGCTTGTTCAGTTTAGGTTATGTGACCTTTTGCTCTTGAGTTCTCCACTTATTTGTAACTGCATCACATGACTTGATTATAATGTGTAACCGTAAAGGGGCTGGGTTTTGGGTATTTGGTGTGTAGGATACTTGTATAATTGTCATAGATTTGTTAGCATTATCAATATGAGCCTAGTGATATTTGTAAATGTCTTTTCGGTTGTTTTCTTTAACTTGATTTTTAA

Function

symbol description
clk4a Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CLK4 (CDC like kinase 4).
clk4 Predicted to enable protein serine/threonine kinase activity and protein tyrosine kinase activity. Involved in regulation of RNA splicing. Predicted to be located in nucleus.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08823 CLK2_3; dual specificity protein kinase CLK2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01196208_01208022.mRNA True 1480 mRNA 0.43 12 1196208 1208357

Neighbor

gene id symbol gene type direction distance location
CI01000000_01176488_01180221 4EB3L, 4EBP, EIF4EBP3, EIF4EBP3L coding upstream 15939 1176450 ~ 1180269 (+)
CI01000000_01149697_01163047 RUFY1 coding upstream 32228 1149697 ~ 1163980 (+)
CI01000000_01105760_01112812 NA coding upstream 82256 1105760 ~ 1113952 (+)
CI01000000_01100131_01102607 NA coding upstream 93484 1100131 ~ 1102724 (+)
CI01000000_01061972_01081591 STOX2A, STOX2B, STOX2 coding upstream 113572 1060647 ~ 1082636 (+)
CI01000000_01209256_01229839 NA coding downstream 132 1208489 ~ 1230359 (+)
CI01000000_01347674_01352321 NA coding downstream 139317 1347674 ~ 1353228 (+)
CI01000000_01405606_01410241 NIPSNAP3A coding downstream 197249 1405606 ~ 1410503 (+)
CI01000000_01459294_01485147 SLC44A1 coding downstream 250937 1459294 ~ 1485311 (+)
CI01000000_01511690_01517631 IKBKAP coding downstream 303333 1511690 ~ 1517719 (+)
G416 NA non-coding upstream 893 1190949 ~ 1195315 (+)
G446 NA non-coding upstream 22853 1171527 ~ 1173355 (+)
G466 NA non-coding upstream 78856 1117115 ~ 1117352 (+)
G424 NA non-coding upstream 97437 1089793 ~ 1098771 (+)
G473 NA non-coding downstream 13936 1222293 ~ 1222517 (+)
G479 NA non-coding downstream 40193 1248550 ~ 1248813 (+)
G480 NA non-coding downstream 44439 1252796 ~ 1253069 (+)
G483 NA non-coding downstream 46683 1255040 ~ 1255303 (+)
G499 NA non-coding downstream 95500 1303857 ~ 1304057 (+)
G350 NA other upstream 519271 671842 ~ 676937 (+)
G252 NA other upstream 689136 503209 ~ 507072 (+)
G435 NA other downstream 216764 1425121 ~ 1432854 (+)
G579 NA other downstream 607096 1767917 ~ 1908808 (+)
G2774 NA other downstream 3245421 4453778 ~ 4454232 (+)
G2850 NA other downstream 3517629 4725986 ~ 4726482 (+)
G6811 NA other downstream 8996474 10204831 ~ 10321679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location