AMCG00017875 (guf1)


Basic Information

Item Value
gene id AMCG00017875
gene name guf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26458218 ~ 26467868 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017875
CATGAACTGGTATTGCTCCACTTGTCTGTGAAGAACAGAGgcttaaaataatacttttacacagacagttttatttatattgatatattgacATGAAACCGTCTTACCCTTTCGAAATACCCGGCATTATgacattgtattgcattgtattgtctCCATTATCCGATTGCCATACAGTACAGCTAATACTGAACACAGCAGCTACAGTGACTGCAGTGCTCAGGTCCCAGACTCAGTAGTCGACCACAATGCAGCTCTGCGTAGTGAACTCTGCTGTCAGACGCCTTCTGGATGTCAGGATATTAAAAGTAATACGAAGAAAACAAGGCTACAGCGCCTGCACTGTGGTGCGACACCGCTGGATGAGACATGTGCCCTCTGTCAGCCTGTACTGCTGCAAGCGGATCAGTTCCCAAAGCCAAAAGgaTGCTATTGACATGTCTAAATTTCCTGTGGAAAACATAAGAAATTTCAGTATTATTGCCCATATTGATCATGGGAAAAGTACCCTCGCAGATAGACTTCTGGAATTAACAGGAGCAATTGCTAAATCAGGAGGCAATAAGCAAGTGCTGGACAAGCTGCAGgtggagcgagagagagggatcACAGTGAAAGCACAGACCGCCTCCCTGTTCTACTCTCATGAAGGACAAACCTATCTGCTCAATCTTATAGATACACCTgGCCACGTTGATTTTAGCTATGAGGTTTCCAGGTCAATTTCGGCTTGTCAAGGTGTTCTCCTAGTAGTGGATGCGAATCAGGGGATTCAGGCACAGACGGTGGCTAACTTTTTTCTGGCCTTTGAAGCCCAGCTGACCATCATTCCAGTGATAAACAAGattgatttgaaaaatgcagaCCCCGAGAGAGTCGAGAGGCAgattgaaaaagtatttgatattcCGAAAGAAGACTGTATAAAGATATCTGCCAAACTGGGGACAAATGTTGATCAAGTTCTCAAGGAGGTGGTGAAGAGAATCCCACCgccAACATTTAGTGTGAAGGACCCATTTAGGGCTCTGGTGTTTGACTCCAATTTTGACCACTATAGAGGCGTCATCGCCAATATCGCCCTGTTCGGAGGGCAGGTGCGTAAAGGAGACCGCATTGTTTCAGCACACTTGGGGAAAGCATATGAAGTCAACGAGCTTGGACTCCTCCGGCCTGAAGAACACCCGACAGAGAAGCTGTATGCGGGGCAGGTGGGCTATGTAATCGCCGGCATGAAGGAAGTGAAGGAGGCTCAGATCGGAGACACTCTGTTCTTGCACAAACATCCCGTTGAACCCCTACCAGGATTTAAACCGGCCAAGCCAATGGTTTTTGCTGGGATGTACCCGGTGGACCAGTCGGACTACAGCAGCCTGCGCAGTGCCGTGGAGAAGCTGACCCTGAACGACTCCAGTGTGACGGTGCACCGGGACAGCAGCCCCGCCCTGGGCGCCGGCTGGAGGCTGGGATTCCTGGGTCTTCTCCACATGGAAGTGTTTAACCAGCGGTTGGAGCAGGAGTACAATGCCAGTGTCATCGTAACGGCCCCAACGGTTCCGTACAAGGCGGTGCTGTCATCGGCTAAACTCATAAAGGAATATGGTGCAGAAGAGATTACCATTGTCAACCCAGCTCAGTTTCCTGACAAGTCCCAAGTTTCTGAGTATTTGGAGCCCATGGTTTGTGGGACTATAATTACCCCTGATGACTACGTCGGCAAGATTATGACTTTGTGTCTGAATCGTAGAGCTgtgcagaaaaacacaatttacattgaCGAGCACCGAGTTATGCTGAAATATCTCTTTCCTCTCAATGAAATCGTGATTGACTTCTATGACAACCTAAAGTCCCTCTCTTCTGGATATGCCAGCTTTGACTATGAAGATGCCGGGTACCAATCAGCAGCCTTAATAAAGCTGGACTTCTTGTTAAATGGGAAGCCTGTGGAGGAACTTACCACTATTGCTCACAAAGACAAAGCATACGCGGTGGGCAAAGCCATGTGTGAACGACTCCAAGACTCGATACCCAGGCAGCTTTTTGAAATCGCTATCCAGGCAGCGATTGGCAGCAAAGTGATTGCCAGGGAGACGATAAAAGCCTACCGGAAGAATGTGCTGgcaaaatgtTATGGAGGTGATATAACCCGTAAAATGAAACTCTTGAAAAAGCAAGCAGAAGGCAAAAAGAAGATGAGAAGAATCGGGAACATTGAAGTACCAAAGGATGCattcattaatgttttaaagcGAAATGACAGATAGAAACTATAtgtaacaagtttatttttctcagcgAGACGTTTCATATAATTGAAGTGcgagagatgaaaaaataccatAAAAGAAATCATTTGATGtgaataatttgaaaaaggttttatgtagtttaaaaaaattaaacctcCCAAGGAATGTTATCCCAGTTTCATATTGAATAACGTTGTGTGGCAAAAAGATGTGTATGCATTCTGTGGGgagaaaatgtaaacatcaaACTATTCTCATAATTTAATTCtcttgtgtttgtaaatatacAGCTGTAGATGTATAAATTGTTACTTGTACGGACCAGGGCGcatatctttttcttttacattatgATAATAGTTTATTCACTGTGGTTCCTCATGCATGGCAGATTTGATTTGCAAGGGCAAACACTACCgaatgaaaaacacatcaagATCTATGCTTCCTGCCGATAGGAAGGTCAGCCCAATTTCTCCTCTATAAATACCCATTCTTGTTGTTATGCAATCTCTTTAGAACTCATTTGGGAGTCTCACCTTCTTGTTTCCATTTCCCCTCAGATCTAAtttattgtgttacaaaatACTCCTGGCTTTACGAAACTTACCTTGACATATGTCACAACATACTTTTGTGTTACTGACATTTGTTTGTTGAAGGCTTTATAATGATGCCACTAAGCAATCCATTCTATGCTTAAGATACTGGGGTATTGAAGTAAACATGTCTACGGTTGTTTACTTTGTATTAATCACAATCAGAGAGTGATAATTATGTAGTCAAACTTATTTGCCACaccttttattttacacaacgGGCTGGATTGAATATTATCCAGAACTGAAATCATTGTAATGCCACACAAAGAAGACTAACACTACATTGGGCAGAGTCTGTTACAGCCAAGTGCACCTTAGAGACCATGTTAAACATATAAATAGTAGGATGTTTATGTTCTAGAATCTAGAACAAGGACAAAATAATAAGGCAGGATCTGGAATGACAAGTCATGAGAGAATCATTGAATGCAGACCAGCTGTTGCGTCAGTTGGAGGATTAGATGCAGCTGCAACTTCTAACAACCTGAACCTAAAGGTGCCTAAAAAACAACAGGACCTTATTTAGTGcaggacatttttaaacatcatcCATTAAGAACATGTCACTCCCGGGCTCAACTTAATTGGTTGGCCTCATATAAGCTGCAAGGCAGACTTGGCAGCAGCGTTGTTTCAACTAAACCGAAGAATCTCATGCTATTACTTTCAGACAACCAAAAGCATCTCCTGGGTTCTGCATTGCTGTAGGTTGTTGCAATACTAGTGTAATAGACTTGAGAACAGAATATTCAGCGATACAAGTGATAAATTAgtcttttaatgaaa

Function

symbol description
guf1 Predicted to enable GTP binding activity; GTPase activity; and ribosome binding activity. Predicted to be involved in positive regulation of translation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 40. Orthologous to human GUF1 (GTP binding elongation factor GUF1).

NR:

description
PREDICTED: translation factor GUF1, mitochondrial isoform X1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K21594 GUF1; translation factor GUF1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017875 True 3640 mRNA 0.43 17 26458218 26467868

Neighbor

gene id symbol gene type direction distance location
AMCG00017874 NA coding downstream 5875 26444418 ~ 26452343 (-)
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding downstream 19107 26437761 ~ 26439111 (-)
AMCG00017876 NA coding downstream 50225 26283965 ~ 26407993 (-)
AMCG00017872 atp8a1,LOC107550857 coding downstream 264385 26112113 ~ 26193833 (-)
AMCG00017870 NA coding downstream 360290 26096440 ~ 26097928 (-)
AMCG00017878 si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522 coding upstream 174514 26642382 ~ 26650068 (-)
AMCG00017879 NA coding upstream 209389 26677257 ~ 26708132 (-)
AMCG00017880 zgc:110204,LOC107688011,LOC107710476,LOC107589116,LOC107716030 coding upstream 326933 26794801 ~ 26820001 (-)
AMCG00017885 NA coding upstream 454926 26922794 ~ 26930593 (-)
AMCG00017884 dapp1 coding upstream 510192 26978060 ~ 26985839 (-)
G93816 NA non-coding downstream 104494 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 199851 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 648365 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 940618 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 1077180 25372933 ~ 25381038 (-)
G93843 NA non-coding upstream 31046 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1294818 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1311169 27779037 ~ 27784050 (-)
G94060 NA non-coding upstream 1625600 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 1952048 28419916 ~ 28420262 (-)
G93796 NA other downstream 348144 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 350413 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 442276 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 500570 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1440006 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 1370383 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1631037 28098905 ~ 28144589 (-)
G94172 NA other upstream 2406293 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 2801367 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 4117861 30585729 ~ 30596417 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007664 guf1 coding NC_007125.7 CM002898.2 4295933 ~ 4321874 (-)