XLOC_007664 (guf1)


Basic Information

Item Value
gene id XLOC_007664
gene name guf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 4295933 ~ 4321874 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015043
TGACGTTTGACCAACATGGCGGCGCACTGTAGCTGTCACACTGGAGCGCACAATCGAGACCCAACTGTTTCTAATCACTGAATGATTGTGTATTTTAATGTTACGATTCTTTTTCGGTCGGAAAAGATCAAAATGCAATTTAACGTCATAACATCGCTTCTATGTTCATGAATTACATGCCATTGAGTTGGTAGAGATGATGTCTCTATTGAGACCCCACGGGCTCTTTCTGCCCTTTATCAAACGCTTGACAGATATTAAAGTATGCCGCGTTAAACGCAGGTCTCAGGGCTGCACCTATAACATTACAGTAATCAGACACAGGTGGATGAAGAGCCTCGGTTCTGTCAGAGACCTCAGCTCATCTGCGACTGAGAAGGAGACTTTCGACATGTCAAAGTTTCCTGCGGAGAGAATTCGAAACTTCAGCATCATAGCTCACATTGATCATGGCAAGAGCACTTTAGCAGACCGACTGCTGGAGATGACAGGAGCCATTGCAAAGACGGCAAGCAACAAGCAGGTTCTGGATAAACTGCAGGTGGAGAGAGAACGAGGAATCACCGTTAAAGCTCAGACTGCTTCCCTTTTCTACCAGCACCACGGACAGACTTACCTGCTCAATCTCATCGACACACCGGGCCATGTTGACTTCAGCTATGAAGTATCGCGGTCTATATCCGCATGCCAAGGAGTTCTGCTTATTGTAGATGCAAATCAGGGAATTCAAGCCCAAACGGTTGCCAATTTCTACCTGGCATTTGAGGCTCAACTTGCAATCATCCCTGTAATAAACAAGATCGATTTGAAAAATGCTGATCCGGAGCGAGTGGAGAAACAGATCGAAACAGTCTTTGATATTCCAAAGGAAGAGTGCATCAGGatttctgCAAAACTGGGTACAAATGTGGAGCAAGTTCTCCAAGAGGTGGTCAAGCGGATTCCTCCTCCAGCAGTGAGAGTGGAGGATCCGTTTAAAGGCCTTGTCTTTGACTCCACCTTCGACCATTACAGAGGAGTCGTGGCCAACATCGCTCTGTTCGGTGGACGGGTGTCCAGAGGAGACAGAATCGTTTCTGCCCACCTGGGAAAGTCATTTGAGGTCAATGAGCTGGGCATCCTGAGACCCGACCAACACCCCACAGAAACACTGTATGCTGGGCAGGTGGGTTATGTGATCGCAGGGATGAAGGAAGTGAAGGAGGCTCAGATCGGAGACACGCTTTACCTCCATAAACAGCCAGTGGAGGCGCTGCCGGGGTTCAAACCAGCCAAACCCATGGTATTTGCAGGCATGTATCCCATGGACCAGTCTGAATATACAGCCCTGCGCAGCGCTTTGGAGAAACTGACGCTCAATGATTCCAGCGTGAGCATTCAGAAAGACAGCAGTCTGGCTCTGGGGGCCGGATGGAGGCTGGGTTTTCTGGGTTTGCTGCACATGGAGGTGTTTAACCAGCGTTTAGAGCAGGAGTACAACGCATCTGTCATAATAACAGCACCAACTGTACCATACAAGGCTGTGCTGGCATCTGCCAAACTCATAAAGgaatATGGTGAGGAAGTGATCACCATCATCAACCCTGCTCAGTTCCCTGATAAGTCGAAGGTGCTGGAGTATCTGGAGCCTATGGTGACGGGAACCATCATCACTCCGGACGACTTCACTGGGAAGATCATGACTCTGTGTCAGGGTCGCAGGGGCATTCAGAAGAACATGGTCTACATTGATGACCACCGGGTGATGATGAAGTACGTTTTCCCTCTAAATGAGATTGTGGTGGACTTTTATGACCAGCTCAAGTCCATGTCATCAGGATACGCCAGTTTTGATTATGAGGACGCTGGATATGAGGCCGCTGATTTGATTAAGATGGACTTTCTACTCAACGGGCAACCAGTGGAGGAACTCGCTGTTATCGTTCATAAAGATAAAGCGTACAGTTCGGGCAAAGCCATATGTGAGAGACTGAGCAATTCCATTCCCAGACAAATGTTTGAGATCGCAGTGCAGGCCGCCATCGGCAGCAAGATCATCGCTCGAGAAACGATCAAAGCTTTCCGAAAGAATGTTCTTGCAAAATGTTACGGCGGTGACATTACCCGAAAAATGAAACTACTCAAGAAGCAGGCTGAGGGAAAGAAGAAAATGCGGCGCATTGGAAACATCGACGTCCCAAAAGACGCTTTCATCAGTGTTCTGAAGCGGAAGTAGTTCATAATCATCAGACATTAAAACTCCGGCGTGTTCGTGTCCATAAATCAAGCCTATGGACAGAACGGGGAGTGATTTAGAAACGCTTTATAGCTTCATATAACTAAGTGATGTTATTCTGGGAACCCACAGCAGGTTTTGATGGATTAATCTTCATGGTGGAAACAACACTGCAGTTCTCGCAGGAGCAGAGACTGCAAGCTAAGGGGTTTTCACTGGAGACGTTTAGACTGAGCGAATGCAGAAGTCATTGGCGGAACTCCtttactttgaaaacatttattttattttcatcaacTGCTGAGGGAGTCGCCGTGAACGTAAAGCTGAAAGCAATCCAGCTTGGGTTTGTTGAAACATTTCTGAGAGTTTGAGGGAAAAAGTGCTGCGTCTAAATGAATAGTCCACCTAAAACGTGAACTAAACGTTTACTTTAAAATTTTCTGAGTCtgtttctgctgttgaacacaaaaataagatattttgaa

Function

symbol description
guf1 Predicted to enable GTP binding activity; GTPase activity; and ribosome binding activity. Predicted to be involved in positive regulation of translation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 40. Orthologous to human GUF1 (GTP binding elongation factor GUF1).

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0006412 translation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005759 mitochondrial matrix cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0043022 ribosome binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-4289 Predicted to enable GTP binding activity; GTPase activity; and ribosome binding activity. Predicted to be involved in positive regulation of translation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 40. Orthologous to human GUF1 (GTP binding elongation factor GUF1).

Ensembl:

ensembl_id ENSDARG00000029088

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015043 True 2703 mRNA 0.47 17 4295933 4321874

Neighbor

gene id symbol gene type direction distance location
XLOC_007663 NA coding downstream 7938 4287253 ~ 4287995 (-)
XLOC_007662 frmpd1b coding downstream 22537 4191136 ~ 4273396 (-)
XLOC_007661 si:dkey-185e18.7 coding downstream 118622 4163773 ~ 4177311 (-)
XLOC_007660 BX088718.2 coding downstream 132512 4160855 ~ 4163421 (-)
XLOC_007659 casp3b coding downstream 150339 4125363 ~ 4145594 (-)
XLOC_007665 LO018287.1 coding upstream 156542 4478416 ~ 4556911 (-)
XLOC_007666 NA coding upstream 274629 4596503 ~ 4599936 (-)
XLOC_007667 NA coding upstream 282513 4604387 ~ 4607757 (-)
XLOC_007668 gabra4 coding upstream 288565 4610439 ~ 4682114 (-)
XLOC_007669 LO018256.1 coding upstream 370875 4692749 ~ 4707172 (-)
XLOC_007641 CU855896.1 misc downstream 1888093 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 1888502 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 1888861 2406945 ~ 2407072 (-)
XLOC_007654 NA non-coding downstream 914630 3362794 ~ 3381303 (-)
XLOC_007653 CABZ01073834.1 non-coding downstream 936879 3325867 ~ 3359054 (-)
XLOC_007646 NA non-coding downstream 1442678 2851570 ~ 2853255 (-)
XLOC_007670 NA non-coding upstream 474874 4796748 ~ 4797259 (-)
XLOC_007671 NA non-coding upstream 510804 4832678 ~ 4844445 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017875 guf1 coding CM030131.1 CM030131.1 26458218 ~ 26467868 (-)