XLOC_007661 (si:dkey-185e18.7)


Basic Information

Item Value
gene id XLOC_007661
gene name si:dkey-185e18.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 4163773 ~ 4177311 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015039
GAACGGAGGGGCTTCATCTAAACGTGTATTTTAATCTTCTGGAAAATATTTAGGAGAAGTTAAATATTTTTGGGAGtctacaatttaatttattatatattcaaaCAAATAGTAACACCTCCCTTCTAAAAGCATATAAACACACTACACCTAATGTTGTACACCCGATGTTGCTAAGTCGCACCCATTTGTAAGTTGGTACAGTCCATCCCCTCAAACATTCGCGGTAAAAACATTCTGTCAGTCAGATTTGAGACAGATGGTTGTCATCTTTTCTTGTTTCTGCTTATTATTGCATGCTATGTTATAAATAATTGAACGCGAATATGAGTAGGATGGCGAAAACTCTGAAAGCTGTGCAGCGGGAGTTGCAGAGTGCAAAACAGAACAGTGTGGGCACTGTGGAGTCTCCTCAGCCGCTGGACATTTCATCCATAGAGAAAGCCAGTTTCTTTCAAGGAGAGCAGTATTCTCCTCATGggaACCCTCTTCACAGCACAGCTCTGGAGGAAGACCCCAGTCCTGGACCAGAACACAACCAAAGGTCCGTTCCACAAAAGACAGGTCAACCGCGGACTAAGAAAAGTGCAAAAATGGCTTCTAAAGCGTCAAAGGAGAACCAGGAGCCAGAAAATCAAACAGCTAAATCTGTTGGAAAAGGTAAAAGCAAAACTTTGGCAACCATATCAGAAGGTGCAGAAAAGAGAAGAACATCAGCTAACGTGAGTGCAGCATCAAAGAAAGCAGGAAAAGTTCAAAGGTCACCAAAAGAAACCTCTCCGACCCCAAGAGCGTCTCAGAATCAGCGGAGGCCTTCGTTGTCCTCAGAGGACCTGACAGATGAGGATGAAAGCTTTCGTCCAGCCAAAGCAAACTCTAAAGGGGCAAAAAGACGATCTTCCAGTCTACGACTGAGCGGCCACAAACAGAAAAGaaaatcttcatcttcatcagACAGAGCTGGTCCTTCTAAAAAACCCAGAGATTTGAGAAATCCCACTGATCTAGACGTGGTGCGCGACGCTTTCCAGGAGTTTGTCACTGAGTACAAGCAGACATTAAACTCTGATCCAGTCAGACGCTCCGTTGAGGCTTTCAGTCGCTCGTTTGAGGAGCAGCTCGCTGAAATAATCACGGCGACAAAGGAGCTCAAGAATGTGCAAAGAGAAAATAACAAGaTCAATAGAGCTATAAATCAGAAGAGGACCAGACTTGTGGAAGCCAATAATGAACTCATTAAGGGGAAAACGCAGCTCCAGAAGCTTCAGAAGGATCTGGATGAGATGGAGCAGAGGTTCAAAGCTCTGACTGAAGGATCCTCTTTGCTCTCCAATTTAAAGGAGCTCAACAGGAAATACCTGAAGCACCGCTCCACTCATCCGGATGAGCTGGAAACGTTTGGCCCATCCTGTATGCCTGCCATGTTGATGGAAGCCAGGTGCATCATGGGAGCAGAGCATCAGCTAAAGACTGTCAATGACCATCTGCAGCAGGTCTTGGGTGGAACGGAAAATGAATAAGCATCACACTGTTCAGctaaacaactaaaataaaacaactgcTCAATGCGCGTGTTTAACgattttatttttggaaattCATTGTAATTATTTATGTAACACAAAACCGGTTGATTTACTGTTCGTTTATTATCGATTTTGGTATTTCTGTTACAGATTAATTATGAAAATACTGTGCTTTTGTGTCTCACTACAATCATAAAAAGTGTCTTCAAAAAAGAACTTCTATGacgaatgttttatttatttttcaatatgtaTTTGCATAGTGCATTTAATATTgtaatcatttttgttttcaacTGCACATTTGTCCAGTTGCAAACACGAGATTATTAATAAC
>TCONS_00015040
ctttggcttcaccacacaaccacatcaGCGTTCACATCACACATATCACAGAAAAaaggcaacacaaatacattcaatatcATCACATAAATCAAACTAAAAACTCAAATGAACCCTTTtcatactttaaatatttaaaactctaATAGCAGCcggcacaaaggacatttgatgtacatttttctttacttgaggTTGCCTGAATCGTCTTATTAATGGCAAAagctgaaattttatatttaaaaaaaaccctCATCTTAATTtgcctctatttatttatttttttgtggttaATTGAACATTGTAGCTTTATATAAATTCAGTTATGATTACAATTTTCTGTAACACTTTAGCTTAATTaacaccatttactactggctcattacctgcctattattaagatattaactgtataTTAGCACTCTCTAATACCTAAACAGAACTACTAGCTTATtatctattaataagcagctaattagtagtttattaagctaaaattCGTAGTTATTACTTGGTGAATAACGTGAATTGTACATTCAATGAAAGTGTGACTCCTTTATCTCAGCTAGTGCTGCAAACTGTGAGGAACCCCTATTACTTGCATGCTGCAATAATAAGGCTACAGTTAATAATAGCCCAATTGTTATATTATCCTGCTATTTGCTAATTGTGTGTATGTCAGTTTTTACATTAGCATCTAAATCTAATTGGGGTTAAAACAACACTTATTAGTTCAACTCGCATGCAAACCAAACTGAAAAACTCCTAGTGAAAATGTTCAATATCAATACATATAGTATATAGATAGTCAATGTATAGCACTTCCTCACAGGTTATTTGTTTTGTTCAGCGTCCAGCCAAAGCAAACTCTAAAGGGGCAAAAAGACGATCTTCCAGTCTACGACTGAGCGGCCACAAACAGAAAAGaaaatcttcatcttcatcagACAGAGCTGGTCCTTCTAAAAAACCCAGAGATTTGAGAAATCCCACTGATCTAGACGTGGTGCGCGACGCTTTCCAGGAGTTTGTCACTGAGTACAAGCAGACATTAAACTCTGATCCAGTCAGACGCTCCGTTGAGGCTTTCAGTCGCTCGTTTGAGGAGCAGCTCGCTGAAATAATCACGGCGACAAAGGAGCTCAAGAATGTGCAAAGAGAAAATAACAAGaTCAATAGAGCTATAAATCAGAAGAGGACCAGACTTGTGGAAGCCAATAATGAACTCATTAAGGGGAAAACGCAGCTCCAGAAGCTTCAGAAGGATCTGGATGAGATGGAGCAGAGGTTCAAAGCTCTGACTGAAGGATCCTCTTTGCTCTCCAATTTAAAGGAGCTCAACAGGAAATACCTGAAGCACCGCTCCACTCATCCGGATGAGCTGGAAACGTTTGGCCCATCCTGTATGCCTGCCATGTTGATGGAAGCCAGGTGCATCATGGGAGCAGAGCATCAGCTAAAGACTGTCAATGACCATCTGCAGCAGGTCTTGGGTGGAACGGAAAATGAATAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-72 Predicted to be located in chromosome, centromeric region and nucleus. Orthologous to human CENPU (centromere protein U).

Ensembl:

ensembl_id ENSDARG00000088924

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015039 False 1863 mRNA 0.42 12 4163773 4177311
TCONS_00015040 True 1513 mRNA 0.38 7 4164116 4170654

Neighbor

gene id symbol gene type direction distance location
XLOC_007660 BX088718.2 coding downstream 352 4160855 ~ 4163421 (-)
XLOC_007659 casp3b coding downstream 18179 4125363 ~ 4145594 (-)
XLOC_007658 irf2 coding downstream 42721 4084120 ~ 4121052 (-)
XLOC_007657 enpp6 coding downstream 87293 4047215 ~ 4076480 (-)
XLOC_007656 snx25 coding downstream 119228 3960541 ~ 4044545 (-)
XLOC_007662 frmpd1b coding upstream 13825 4191136 ~ 4273396 (-)
XLOC_007663 NA coding upstream 109942 4287253 ~ 4287995 (-)
XLOC_007664 guf1 coding upstream 118622 4295933 ~ 4321874 (-)
XLOC_007665 LO018287.1 coding upstream 301105 4478416 ~ 4556911 (-)
XLOC_007666 NA coding upstream 419192 4596503 ~ 4599936 (-)
XLOC_007641 CU855896.1 misc downstream 1755933 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 1756342 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 1756701 2406945 ~ 2407072 (-)
XLOC_007654 NA non-coding downstream 782470 3362794 ~ 3381303 (-)
XLOC_007653 CABZ01073834.1 non-coding downstream 804719 3325867 ~ 3359054 (-)
XLOC_007646 NA non-coding downstream 1310518 2851570 ~ 2853255 (-)
XLOC_007642 NA non-coding downstream 1642876 2511851 ~ 2520897 (-)
XLOC_007667 NA non-coding upstream 427076 4604387 ~ 4607757 (-)
XLOC_007669 LO018256.1 non-coding upstream 515438 4692749 ~ 4707172 (-)
XLOC_007670 NA non-coding upstream 619437 4796748 ~ 4797259 (-)

Expression


Co-expression Network