XLOC_007654


Basic Information

Item Value
gene id XLOC_007654
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 3362794 ~ 3381303 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016024
aatgtaagtaaaaaaagTTGCAAACCCAAAACATCTGCGGTTCACCTTATGAGGAAACTCAGATGATGAAGTGTGAAATGCTCAGATGTTTCCTCATGTGTCAATGTGAGTCTCTCTGTCGgagagcagaacacacacacacactctcacacacactgaaAGTCTTCTCTTGTGGATGCTGGAGTTGAGGAAGATCATGCTGGTGTTTGAGCTGCTGCTGATACTGCAAACTGCTGCATgtGTGGAGCGCTTCTGCAGTTTTGCTCAGTCAGATCCCTGTTACGCAGCTTTGGGAGACAAACTCAACCTGCAGATGGTGGTTGCTAATAAACATAACCTGTCCATAAGAAAGAGGATAAACAACAACACACAAGATGATctagtttgtaaagtaaaattATTGAACGCTTGTGATCTTTATAAAAACAGACCTGAAGTGAGAATCATTAACGGGACTGTGATAATAAACACTGTGAAGAGAGAAGATTCAGGAGATTACAGATTACGACTTAATAATCCTGATGGCGCAGACACGTTTAAAGATCTTCAGGTGAATGTTGAAGCTCCTGTTGGCTCAGTTAGGGTGTCAATCAACTGCTCCTCCAATCAGATGAGGTCAGTGTCCTGCTCCTCTGAGGGGGATCAGCTCCTCTACAGCTGGACTCTCAATGGAGAAACACTGATGGATGAAAACAGCAGCATTCAGCTTGAAGAGGAAACTGAAGGAGAAATCACCTGCACTGTAAAGAACCACGTCAGTAAAAGACAGAAGACTGTTAGCACCGAAGACTGTTTAGTGACCAGCAGCAGTCTAACAACATCAAACTGGGTGTCTCACAGCTCTATGCTGGTCATTTATTTGATGACTCTGTTCGCTCTGTTAGGAGGATTTCACATCTACATCCACACACAAGTCAGGTGAGAGACGATTATGATCAGCGTTATTGATTCAACGTGCATATAAAgtgtgaagatgatgatgatgatgtgatgCTTTTAGGAAAGAAAGAAGATCAAAACCTGATGATGAGGAGATTTAGAGAAGAACACAGAGCAGATCCCATCACATCTGTATTAAAATGACTGCACGATTTCCAAGAGTTTATTTTCATATAGTTTTCTCGTCTTTGATTGATTTCTCATTGTTTATAATACCTAAACCATTCAAACATTTCCTCTTTGTGTGTAACTCAGTTTTGAGTTTTGAGTTTTcaggttcaagtcccagctgggtcagttggcatttctctgtggagtttgcttgttctccctgtgttggtgtaggtttccctCCCGCTATAGGGGAGTTGAATAAATATGTGTGccatataatatgccatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgagtgtgtatgggtgtttcccagtactgggctgcagctggactttcattcgctgcataaaacaaat
>TCONS_00015027
ttttttaaaatttgtatttaatatttttgtatagcATAAAAAAATTTTGGTGTACTAGTtattggaccgttatcgtaagttattttgttagataagctccagatttggcttcagtactgacttatttaatgtatatgcacaaatataatattgtatatcttcctattaaaaacataaatgttaaagttacatttgtgaggggtgtacttatatacgctgagcactatatatatatatatatatatatatatatatatatatatatatatatatatatagtataaatttaatataatgttgACAAAGTAGATGAATCAAGATGATTCTTGAGAATGACTAAAGACAAAATCTGACATCTCAGACTACACCTATATGTTATGACTAGTCTGttagtctctctctttctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaacagagCAAGACCCTAAGAAAAATACTTTTACAGAAATACTACACATATATGTtttatcactctctctctctctctctctctctctcccacaacAACCACAGACAGAGAGTGATATATACAGAGAGATTAAACCGATACAAATCATTGTGAAGTTTCCAGGGAATCAAATACTGTCAGTGGTGAACCAGTGGGACCAGTTTCACCCTCAAATTCAGTGAAAGAAATGGAGAATGCGAGTGTGGAGGAGGAGATACAGCCATcagtctgtgtgcgtgtgtgtatatatacatcaGTCTGTGCATGTGGAGCTTCATCCAGCTGAAGAACATCCCTGCAGGTCCAACACAAGACAAGAATCTTAAGCAGCCATGGCAGGTGCCAGCTTTAAACAGGAGTTTCTGCAGACTCATAACCAGTACCGGCATCAGCACCAGGCACCGCCGCTGGTCTACCGTGAGGATCTGTGCAGGGCCGCTCAGAAATGGGCCGAACACATGCTGAGCAAAAAATCTCTGGGCCACAGTGAAACAGAGAACGGGGAGAACGTCTATTACTCCTTCAGCTCCGTCAAAAAGACACCAACAGgAAAGGAAGCTGTGGACTCTTGGTACAGTGAAATCAAAGATTACAATTTTGCAAAATCAGGACATCAACCTAAAACAGGTCATTTCACGCAGGTTGTGTGGAAATCCTCCAAAGAGCTCGGAGTCGGTCTGGCTACTGACGGAAACACAGTTTTTGTGGTTGGTCAATACAAGCCTGCTGGAAACATAACCAACGCTGGCTATTATGAGCAAAATGTTCTGCCTAAAAAACAATAATGTTcctttttttgattgttttaaaatataaacgtATTAAGCAGATGCTTTTTAAGTGACTCAATCAGAGCTTTCAGATTAAATATAAAAGACAGGCCTATAATGCATTGTGAATAAATCCTGTGTTTGTGATTTTAATAAAGTAATCAATCAATTATAagcaaatgtgtatttatttatactgaTTAACTGTATAATTTTGGCTGAACCAAATTTTGTCAAGAAACAAAGATATGAAACTATACCAGAATAATTTAACTTCGATGATACAACAATGTGGTGTTAGACTTTAACCCAACAAAATCtactgtatttattaattgtgttaactttttttttaataatataaaaatattatataaaatattataagaatATAATATACAAATTGGCCAGCTCCTCCTCCCTCCGCGCCTCCGCTTCGCCAACGTAACACTGCGAGccaagcggacaaactggttgcagcgggaaagtcctccacacggaggtgagccgtaagtcataaaaaacaaaatgctgcCATACGTACCTTCAGCCATGTAAATcccagtctccagaaacgtccgcggggctacgtttccagaatgagcttgggttgattttGGTATGTAGTTTAACCAATCTTcccatataataattatacatttgacaACAACATAAGTTAGTCCCTTAGGACcaaatgctgaattgtacacctgtcacactctaaaattccatattaatttggttaagagcttattagacaataaataaacttaatttgtatttgtgaaaatttccttgctcggttaaacatcatttgggaaatatttaaaaaaagaagaaaaaaaatggggggtaataattctgacttcaagtgtatatgcAGATGTGATTTGGTCTCTAAGTATGCTAAGTACACATAATTTAGTATATAAAACTACATCAAGTACACTAAAGGTTATAATGAGTTACtataaattaattacaattaaaataaacctaacacaaatttaattaaatttaagtaaGATTATGTTGTAAAGTGAAGAATCCTTACAGAAgcgtatttgtttttcattacaGTAAATCTTAGTTAAAGAAGGACATTTACGCCGCATCTTATatgaaaaactaaatatgaaGTAGAGAAACACATTACTGCTATAACATGAGCTGAAGTTTGCATTGTctgatttttttcattaaaaaacaatCAGTTATAAATGGCAAAAGTTCCTGCTCAGTTCATGGAGCTGACACTGTAATTTTGTCCGACTTCAATAGGCATAGCttattttcattttcacataTGAGTTTACAGAATTTGTATATGCATAATAGTTATATTTGAGCCTGATTACAAAATCTATTCAAATTATCTTTTAGCCAGAAAAGAAAAGTTTGAATacataaaaatgtaagtaaaaaaagTTGCAAACCCAAAACATCTGCGGTTCACCTTATGAGGAAACTCAGATGATGAAGTGTGAAATGCTCAGATGTTTCCTCATGTGTCAATGTGAGTCTCTCTGTCGgagagcagaacacacacacacactctcacacacactgaaAGTCTTCTCTTGTGGATGCTGGAGTTGAGGAAGATCATGCTGGTGTTTGAGCTGCTGCTGATACTGCAAACTGCTGCATGTGAGTCCACCTTCAGCTCAAACTCCTGCTCTGATCACTTACATTAGCATTATAACAACATCTGTGCTGTAATGTTAGATTAAGAGCATCATGCAGAGATCTAATAATCATGCTTTAGGGTCTTCAGGACTGTGTGTATTAGTGGTGTGAAGGTACCTGTGTATTAGTGCAGTGTTAATACAGTATGTGAGAGAATGCCGCTCACTTTTAGGAAACAGTGTCCTCTGTGGaagtaaaacagtttttaaaaagtaaaaataaatgaattataagcagtgttattttaataaaatcatcaaataagtattattttattatatttttagtttCCACATGCAAACaggattattatttaattaaattatttattactttccaTATCAAATTGTAAGTCACTGTGAACTTATAACTGACAGCTCTGATTTCCATGCaacatgactgtatttattataaatgatggagcatgtaattatttttatgtttatgatTGAGCCTCTGTATTTATAACAtctcttggtaacactttacaacaggggtcaccaatctcggtcctggagggccggtgtccctgcagagtttagctccaacttgcctcaacacaactgcctgggtgtttcaagtatacctagtaagaccctgattagcttgttcaggtgtgtttgattagggttggagcgaaaatctgcaggacaccggccctccaggaacaagtttggtgaccactgctttacaataaggttcattagttaatgcatttactaacattaactgatcatgaacaacacatgtacagcatttattaatcattattgaacatttactaatgcattattaacatccaagtccatgcttgttaacattaattaatgcaccatgagttaaaatgaactaacaatgaactactgtattttaattaactaacgttaactaacatgaacaaatactgtagtagatgtacttttcattgtttgttcatcttagtaaattaattaattaacattagctaatgaaccttattgtaaagtgtgacccatctCTTTTATTTTCTGATACTTCACAAGAATGAAAGTATCTTCTATTAGATGCTGACTGTGAGTTCAGTCGTAATAtgattgtgttctgcatcctctTGATCACCGCGGTTGTTGTGTCAGGAGAAACACAAATAAAGCCTTTTCTTTTAGGAAACAGTCACGTTCATAATGATGCTTTAGGACAGGTCAAGACTCTGAAATGTTCAGTGCTGATTATAGTGATTGTTTATTGTATTTGATgtctgatatttatattttatagtgaAAGATATTTATAACGGCAATAAAAAACTGTAGATGTTGATATTtccgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttcaggtGTGGAGCGCTTCTGCAGTTTTGCTCAGTCAGATCCCTGTTACGCAGCTTTGGGAGACAAACTCAACCTGCAGATGGTGGTTGCTAATAAACATAACCTGTCCATAAGAAAGAGGATAAACAACAACACACAAGATGATctagtttgtaaagtaaaattATTGAACGCTTGTGATCTTTATAAAAACAGACCTGAAGTGAGAATCATTAACGGGACTGTGATAATAAACACTGTGAAGAGAGAAGATTCAGGAGATTACAGATTACGACTTAATAATCCTGATGGCGCAGACACGTTTAAAGATCTTCAGGTGAATGTTGAAGGTCAGTAAATCTCTCATCAGACTCATTATTACAATCTCATGTTCTCTAAAGATCTCCCACTTCTGCAGATCAGTGTTATATATATGAAGAGATCTGCGCACTAAACTGATCACTGAATCACTGCAGCACTGACAATAAATCATCTGCACTTGATGTACTGAGGTCATTTATAGGACTGAAcatgtttttatgtatatttccagttgttttaaaaataaaattttgttttcaGATGGTTAACCTGTTAAATTTTCTGACATTATAATCTTTAAAGAACATTTTGTATAGACATATCTTGACACAGACTCTGATTAGATGATGAGTGATGAAAGTATCTGTCATGTGCTCCGCCCTCCAGCTCCTGTTGGCTCAGTTAGGGTGTCAATCAACTGCTCCTCCAATCAGATGAGGTCAGTGTCCTGCTCCTCTGAGGGGGATCAGCTCCTCTACAGCTGGACTCTCAATGGAGAAACACTGATGGATGAAAACAGCAGCATTCAGCTTGAAGAGGAAACTGAAGGAGAAATCACCTGCACTGTAAAGAACCACGTCAGTAAAAGACAGAAGACTGTTAGCACCGAAGACTGTTTAGGTGAGATAGtcaaaaagtttgtttgtttgttggtttacgtagttttatttattcatttgatgcTGTAATCTCAGGTTTAACCTCTAGTTTGACTTTTACAGTGACCAGCAGCAGTCTAACAACATCAAACTGGGGTAtgagtttaacagagcaatacaGGAATCCTGATGGACAGATTTTGTTTCGTGTTTAATTGTTGTCTTCTGTGTTCAGTGTCTCACAGCTCTATGCTGGTCATTTATTTGATGACTCTGTTCGCTCTGTTAGGAGGATTTCACATCTACATCCACACACAAGTCAG
>TCONS_00015028
TGTTTAATCAGCTCAAAACAGCGAGCGGATGTCAAAGGAAATGATTAATATCCCCCAACAAGAAATGGCTTTTCCTCTCTAAAACGGCTCtgctcatccacacacacacacattcatgacCCGAAGTACAAGACTGAGTTTTCGACAGGCATGAAATAACAGTGAGTTTAATAGACTGTGCTGTCTGTTTGCTGAGTTTCCAGGGAATCAAATACTGTCAGTGGTGAACCAGTGGGACCAGTTTCACCCTCAAATTCAGTGAAAGAAATGGAGAATGCGAGTGTGGAGGAGGAGATACAGCCATcagtctgtgtgcgtgtgtgtatatatacatcaGTCTGTGCATGTGGAGCTTCATCCAGCTGAAGAACATCCCTGCAGGTCCAACACAAGACAAGAATCTTAAGCAGCCATGGCAGGTGCCAGCTTTAAACAGGAGTTTCTGCAGACTCATAACCAGTACCGGCATCAGCACCAGGCACCGCCGCTGGTCTACCGTGAGGATCTGTGCAGGGCCGCTCAGAAATGGGCCGAACACATGCTGAGCAAAAAATCTCTGGGCCACAGTGAAACAGAGAACGGGGAGAACGTCTATTACTCCTTCAGCTCCGTCAAAAAGACACCAACAGgAAAGGAAGCTGTGGACTCTTGGTACAGTGAAATCAAAGATTACAATTTTGCAAAATCAGGACATCAACCTAAAACAGGTCATTTCACGCAGGTTGTGTGGAAATCCTCCAAAGAGCTCGGAGTCGGTCTGGCTACTGACGGAAACACAGTTTTTGTGGTTGGTCAATACAAGCCTGCTGGAAACATAACCAACGCTGGCTATTATGAGCAAAATGTTCTGCCTAAAAAACAATAA

Function

GO:

id name namespace
GO:0097433 dense body cellular_component
GO:0099186 structural constituent of postsynapse molecular_function
GO:0098973 structural constituent of postsynaptic actin cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050309-169 Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including EVL; apical ectodermal ridge; epidermis; fin fold pectoral fin bud; and periderm. Orthologous to human CRISP1 (cysteine rich secretory protein 1).

Ensembl:

ensembl_id ENSDARG00000109310

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016024 False 1492 lncRNA 0.42 5 3362794 3366297
TCONS_00015027 False 5644 mRNA 0.36 4 3363368 3372932
TCONS_00015028 True 865 mRNA 0.46 5 3367694 3381303

Neighbor

gene id symbol gene type direction distance location
XLOC_007653 CABZ01073834.1 coding downstream 3740 3325867 ~ 3359054 (-)
XLOC_007652 pdgfrb coding downstream 94639 3186485 ~ 3268155 (-)
XLOC_007651 csf1ra coding downstream 181847 3143337 ~ 3180947 (-)
XLOC_007650 si:zfos-1069f5.1 coding downstream 227958 3123517 ~ 3134836 (-)
XLOC_007649 slc35a4 coding downstream 291156 3062608 ~ 3071638 (-)
XLOC_007655 PIGG coding upstream 336442 3717745 ~ 3944017 (-)
XLOC_007656 snx25 coding upstream 579238 3960541 ~ 4044545 (-)
XLOC_007657 enpp6 coding upstream 665912 4047215 ~ 4076480 (-)
XLOC_007658 irf2 coding upstream 702817 4084120 ~ 4121052 (-)
XLOC_007659 casp3b coding upstream 744060 4125363 ~ 4145594 (-)
XLOC_007641 CU855896.1 misc downstream 954954 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 955363 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 955722 2406945 ~ 2407072 (-)
XLOC_007646 NA non-coding downstream 509539 2851570 ~ 2853255 (-)
XLOC_007642 NA non-coding downstream 841897 2511851 ~ 2520897 (-)
XLOC_007625 NA non-coding downstream 1488747 1868374 ~ 1874047 (-)
XLOC_007624 NA non-coding downstream 1500785 1861358 ~ 1862009 (-)
XLOC_007660 BX088718.2 non-coding upstream 779552 4160855 ~ 4163421 (-)
XLOC_007663 NA non-coding upstream 905950 4287253 ~ 4287995 (-)
XLOC_007666 NA non-coding upstream 1215200 4596503 ~ 4599936 (-)
XLOC_007667 NA non-coding upstream 1223084 4604387 ~ 4607757 (-)
XLOC_007669 LO018256.1 non-coding upstream 1311446 4692749 ~ 4707172 (-)

Expression


Co-expression Network