XLOC_007624


Basic Information

Item Value
gene id XLOC_007624
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 1861358 ~ 1862009 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016021
ctacagcttaaagtgacatttaaaggcctgactaggttaataaggtaactaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactaacgaaaaaaaaaattggcctaaaggggctaataattttgtcacaaaaatgtttttaaataaattaataactgcttttattctagcctaaataaaacaaataagacatttccagaagaaaaaatattgtcagacatacattgaaaatttcctcgctctgttcaacataatttgggaaatatttaaaaaagaaaaaaaaaatcaaaagggggctaataattctgactttctgAATAATTCTgacagaaattattttattatcctATCTATATGGCAAAGTAAACAATTGGGCTAAccaaaactgtatttatttgcaaataatTCTAGCAAGGTTTTACAGTTAATCATATATATACTGCTTTTTTATattctaaaatgtcatttcagCATTACTCCAGTGAAATACTCCAtcctaatgaaatcatttgaTGTTCGAGAGGCATTTCTGATTATTATCAATATAGTAAACAGCTATTTTGCATCATAATATGTAGAAatcatacaatttttttaaaaagaactgCACTTATTAAAACAGAAACCTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016021 True 652 lncRNA 0.28 1 1861358 1862009

Neighbor

gene id symbol gene type direction distance location
XLOC_007623 NA coding downstream 21456 1807336 ~ 1839902 (-)
XLOC_007622 CABZ01029590.1 coding downstream 165516 1695724 ~ 1695842 (-)
XLOC_007621 LO018106.1 coding downstream 194204 1658827 ~ 1667154 (-)
XLOC_007620 LO018106.2 coding downstream 214998 1644798 ~ 1646360 (-)
XLOC_007619 LO018564.1 coding downstream 226062 1595725 ~ 1635296 (-)
XLOC_007625 NA coding upstream 6365 1868374 ~ 1874047 (-)
XLOC_007626 pcdh2g28 coding upstream 25668 1887677 ~ 2032753 (-)
XLOC_007627 BX005294.2 coding upstream 173740 2035749 ~ 2036604 (-)
XLOC_007628 BX005294.1 coding upstream 184777 2046786 ~ 2050057 (-)
XLOC_007629 pcdh2ab9 coding upstream 256766 2118775 ~ 2327853 (-)
XLOC_007639 CU855896.3 misc upstream 544936 2406945 ~ 2407072 (-)
XLOC_007640 CU855896.2 misc upstream 545319 2407328 ~ 2407431 (-)
XLOC_007641 CU855896.1 misc upstream 545727 2407736 ~ 2407840 (-)
XLOC_007608 NA non-coding downstream 801824 1058344 ~ 1059534 (-)
XLOC_007607 NA non-coding downstream 857960 1003048 ~ 1003398 (-)
XLOC_007605 NA non-coding downstream 890505 933003 ~ 970853 (-)
XLOC_007642 NA non-coding upstream 649842 2511851 ~ 2520897 (-)
XLOC_007646 NA non-coding upstream 989561 2851570 ~ 2853255 (-)
XLOC_007653 CABZ01073834.1 non-coding upstream 1463858 3325867 ~ 3359054 (-)
XLOC_007654 NA non-coding upstream 1500785 3362794 ~ 3381303 (-)

Expression


Co-expression Network