XLOC_007608


Basic Information

Item Value
gene id XLOC_007608
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 1058344 ~ 1059534 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016334
cccattatAACCTGGAATTGTTaagtttaatttttataattatgcacataattattttacttaatttcaaGGCTACTGGATTACTCACTttcagtaaagtcaactaatcgatttaaaagcatcaggtttactcacttttttaagtaaggtcaactaatctctttaaaagcaacaggtttactcaccttttttaaagataaagtcATCTAatagctttaaaagcaatgggtttgcTCTTTTCAAAGTCAACTAATAGCTTTAAATGCATcaaatttactcactttatttaagtaaagttaactaatccttttttaaagcaacaggtttactcactgattttgagtaaagtcaactaatcgatttaaaagcatcgcatttactcaatttttttcaaaagtaaagtCAAGTAGTTGATTTAAAAGCCTTGGTTTACTCTCTTTTTTCTAGTaatgtcaactaatcactttaaaagcgtCGGGTTTACTCCTTTTAATGGTAAAGTCCGCTAACAGCTTGAAATGCATcaggttttctcttttttttaaagtaaagtcaactaatctccttaaaagcattacatttattaatgttattcaaGAGTAAAGTCAAGTAATCGATTTAAATGCATcaaatttactcactttatttaagtaaagttaactaatccttttttaaagcaacaggtttactcactgattttgagtaaagtcaactaatcactttaaaagtgtCGGGTTTACTCATTTTAATGGTAAAGTAAGCTAACAGCTTTAAATGCATCAGGTTgtctctttttttaagtaaagtcaactaatctccctaaaagcattacatttattaatgtttttcaaGAGTAGAGTCAAGTAATcgatttaaaagcaacaggtttccTCACTTtttgaagtaaagtcaactaatcgctttaaaagcgtCTGGTTTGCCCTTTGTGACAGTAAAGTCCTCTAATAGCTGTAAATGCATCGGGTTTTCTCacttattttaaagtaaagtcaagtaacctttttaaaagcatggcatttttttttcacttttctcaaagtaaagtcaactagtcACTTTAAAAGCATCTGATTTACTCACTCTTTTAAGTAAGGTCAACtagtcactttaaaagcaacaggtttactcacttttttaagtaaggtcaactaatcactttaaaagcaacag

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0099643 signal release from synapse biological_process
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098659 inorganic cation import across plasma membrane biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0098739 import across plasma membrane biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0099587 inorganic ion import across plasma membrane biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005391 sodium molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016334 True 1191 lncRNA 0.30 1 1058344 1059534

Neighbor

gene id symbol gene type direction distance location
XLOC_007607 NA coding downstream 54946 1003048 ~ 1003398 (-)
XLOC_007606 arsia coding downstream 81432 973103 ~ 976912 (-)
XLOC_007605 NA coding downstream 87491 933003 ~ 970853 (-)
XLOC_007604 CU928046.1 coding downstream 159152 863031 ~ 899192 (-)
XLOC_007603 slc34a1a coding downstream 199357 834619 ~ 858987 (-)
XLOC_007609 FQ311908.1 coding upstream 10494 1070028 ~ 1098607 (-)
XLOC_007610 arl9 coding upstream 132780 1192314 ~ 1200854 (-)
XLOC_007611 srp72 coding upstream 144074 1203608 ~ 1228690 (-)
XLOC_007612 CABZ01081490.1 coding upstream 214767 1274301 ~ 1280907 (-)
XLOC_007613 il21 coding upstream 244396 1303930 ~ 1313480 (-)
XLOC_007639 CU855896.3 misc upstream 1347411 2406945 ~ 2407072 (-)
XLOC_007640 CU855896.2 misc upstream 1347794 2407328 ~ 2407431 (-)
XLOC_007641 CU855896.1 misc upstream 1348202 2407736 ~ 2407840 (-)
XLOC_007597 NA non-coding downstream 394224 634038 ~ 664120 (-)
XLOC_007594 NA non-coding downstream 550213 506778 ~ 508131 (-)
XLOC_007622 CABZ01029590.1 non-coding upstream 636190 1695724 ~ 1695842 (-)
XLOC_007623 NA non-coding upstream 747802 1807336 ~ 1839902 (-)
XLOC_007624 NA non-coding upstream 801824 1861358 ~ 1862009 (-)
XLOC_007625 NA non-coding upstream 808840 1868374 ~ 1874047 (-)
XLOC_007642 NA non-coding upstream 1452317 2511851 ~ 2520897 (-)

Expression


Co-expression Network