XLOC_007623


Basic Information

Item Value
gene id XLOC_007623
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 1807336 ~ 1839902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016020
ACGGCGAACTACATCAGTGTTATCCAGCGGTGTGTGTAATTAACAGGCCTCGGACGGTTACCTGTGTCAGAAAAGAGACAAAAACCCAAATggaaaagtgtgtgtgttcactTTCTGTCTATAACAAACGCACAGTATTTCTCCTCAGTCAGCGGAGCGGGAATCATTGAGGTTGTCACGCGTTTCCTTGTGAATGTGCTGACTCAAAACAAGCAGATTCACACTTATTATCATCCGCTACACACACACCAGCTTTCAGAGTTGAAATCCAGCAACCTGCAGGAATATGACAGACAGTAATGATGGTTTGTCGAAGTAATGAGAAGCTGCTCTGTCAGGGCACAAACGCACCGGCGTATCCTGAGAAGAATGACACCACTTATTCCCCACACACATCCCTCGTTTTTCTGCCCCTTGAGAGAAGCCATCAGTCATTACTGTCAGCAGTGAAGttccaccatcatcatcatcatcatcatcatcatcatggttTCATTCATTTCCACCCCCCGGCGTCCTGAAACAGAGACCGGACGACTGATGAGTGGCTGAGATCAACAGGTGGCTGATCTTTTGAGCTGCTGCTGTGAATTCTGAATCGCTCTGTCCAGCCATGCGGACAAACACTCGACACAAACAGCCATTAAAATTCACTGTATTCTCAGGCtcactacacaaacacacacacacacacacacacaccacacacacacacacatctcagatTTGGTGATCTTTATGGATTGAGATAGACACTCTCGTGGTTTGGACTTGTACTTGCGGGAGTAATGGCAttgatttaaatgacaaaaataactgcaCGTTTCTACAAGTCAATCATTAATGCACAAGAAACTAAATGAGATAATGATTGAAAAAATCATTGAAACTGCG
>TCONS_00014938
GTCAGGACACTCACATCAGGTGACCCAACCGAAGTGAACAGACGGACTGCTTGGACACGACATCTAGGAAACTGTTTGTGATGCAGAAATCTGAGGCACAAACGCACCGGCGTATCCTGAGAAGAATGACACCACTTATTCCCCACACACATCCCTCGTTTTTCTGCCCCTTGAGAGAAGCCATCAGTCATTACTGTCAGCAGTGAAGttccaccatcatcatcatcatcatcatcatcatcatggttTCATTCATTTCCACCCCCCGGCGTCCTGAAACAGAGACCGGACGACTGATGAGTGGCTGAGATCAACAGGTGATCATAATCCCTTACCATTCACCCACATGAAGATGCTAGAATCCCCATGTAGT
>TCONS_00014939
ACGGCGAACTACATCAGTGTTATCCAGCGGTGTGTGTAATTAACAGGCCTCGGACGGTTACCTGTGTCAGAAAAGAGACAAAAACCCAAATggaaaagtgtgtgtgttcactTTCTGTCTATAACAAACGCACAGTATTTCTCCTCAGTCAGCGGAGCGGGAATCATTGAGGTTGTCACGCGTTTCCTTGTGAATGTGCTGACTCAAAACAAGCAGATTCACACTTATTATCATCCGCTACACACACACCAGCTTTCAGAGTTGAAATCCAGCAACCTGCAGGAATATGACAGACAGTAATGATGGTTTGTCGAAGTAATGAGAAGCTGCTCTGTCAGGGCACAAACGCACCGGCGTATCCTGAGAAGAATGACACCACTTATTCCCCACACACATCCCTCGTTTTTCTGCCCCTTGAGAGAAGCCATCAGTCATTACTGTCAGCAGTGAAGttccaccatcatcatcatcatcatcatcatcatcatggttTCATTCATTTCCACCCCCCGGCGTCCTGAAACAGAGACCGGACGACTGATGAGTGGCTGAGATCAACAGGTGATCATAATCCCTTACCATTCACCCACATGAAGATGCTAGAATCCCCATGTAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016020 False 894 lncRNA 0.44 3 1807336 1839902
TCONS_00014938 False 373 lncRNA 0.49 2 1816294 1821767
TCONS_00014939 True 617 lncRNA 0.46 2 1816294 1839902

Neighbor

gene id symbol gene type direction distance location
XLOC_007622 CABZ01029590.1 coding downstream 111494 1695724 ~ 1695842 (-)
XLOC_007621 LO018106.1 coding downstream 140182 1658827 ~ 1667154 (-)
XLOC_007620 LO018106.2 coding downstream 160976 1644798 ~ 1646360 (-)
XLOC_007619 LO018564.1 coding downstream 172040 1595725 ~ 1635296 (-)
XLOC_007618 CABZ01064248.1 coding downstream 242019 1563985 ~ 1565317 (-)
XLOC_007624 NA coding upstream 21456 1861358 ~ 1862009 (-)
XLOC_007625 NA coding upstream 28472 1868374 ~ 1874047 (-)
XLOC_007626 pcdh2g28 coding upstream 47775 1887677 ~ 2032753 (-)
XLOC_007627 BX005294.2 coding upstream 195847 2035749 ~ 2036604 (-)
XLOC_007628 BX005294.1 coding upstream 206884 2046786 ~ 2050057 (-)
XLOC_007639 CU855896.3 misc upstream 567043 2406945 ~ 2407072 (-)
XLOC_007640 CU855896.2 misc upstream 567426 2407328 ~ 2407431 (-)
XLOC_007641 CU855896.1 misc upstream 567834 2407736 ~ 2407840 (-)
XLOC_007608 NA non-coding downstream 747802 1058344 ~ 1059534 (-)
XLOC_007607 NA non-coding downstream 803938 1003048 ~ 1003398 (-)
XLOC_007605 NA non-coding downstream 836483 933003 ~ 970853 (-)
XLOC_007604 CU928046.1 non-coding downstream 908144 863031 ~ 899192 (-)
XLOC_007642 NA non-coding upstream 671949 2511851 ~ 2520897 (-)
XLOC_007646 NA non-coding upstream 1011668 2851570 ~ 2853255 (-)
XLOC_007653 CABZ01073834.1 non-coding upstream 1485965 3325867 ~ 3359054 (-)

Expression


Co-expression Network