XLOC_007613 (il21)



Basic Information


Item Value
gene id XLOC_007613
gene name il21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 1303930 ~ 1313480 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00014923
GGAACTGACAGCATTTAGTAGTTTCCTGCCAAGTGTGCAGAAAGTCTGGGTccggttcacacacacacactcactcacacacacacacacacacacacaaaactgcatCCGTACACCCCCGCGCACGCGCCTCTCGATTACATCTTTGTCAACTGACAAAATCATGACGAAGGCCAGCGGAAAGGAAATCGAGTCATTGTAGAATCGAGTTTTCCAATCTCCACAAAGAAGCGGTTTTCCAGCGTCCTCAAGGATTCTTATATAAGGTGATCGAGCACCTGTGTGGCAGTATGAAGGAGATCAATAGCAGCAGCTTTACAGAAGACCAAACTGTACATCTTAAACATGAaggcgtgtgtgtgttttctgcttaTGTGTGTGTTGGCAGCACAGGCTGAGGAGTCGCCGAAGATCCTCACGCTCAGCAAAGTCATGAATGAACTCAAGAAGATTCAGCAGGGGCTGACGAATTCAAACAAGACTTGGTTCAACTCTCCAGCCACCAATGATTTGAAGGACTGCTGTGTTGCGTCTGCTCTGGAGTGTTTCAGGTCTAAAGTGCTGCACCTGTCAGTTTCTGATGAAAAACTAAAGAAGTCACAGAGAAGTGTCCACCACGAGCTGCGCAAATCATTCAtcGTGGACAGTGTGTCCTGCACACCACAAGAGACACAGAAAGCTCAGTGCAAATCATGTGAAGCGTACACAATGGTCAACAGCCGAACGTTTGTGGACAACTTCAAAACTCTTCTGCAAAAGAGATCTATGCCCGTCAAGCGTAGAGACCTGAAGAGTCTGTGAAGGACAGTATGACACTACCCACCGCTCCTGCTATTCTATTTATTGACTATTTATTGAcagttttgctgtttatttaactttGGATGTGTAAAATGAGTGTTCACGATGACACTGGAGTGTGTTTGTGAGAAACTGGGCTGCTAAGCTTCTTTCCGTGGTCTGTTTTGCTGGTTTTTGCCGCCACCGTGTGGTGAAATCTCATCACTGCAAAGcctaaccataataataatgcaaGGGAATTTTGAGTAGATATCTCCCTTTATCAAGTATGCAAGAGTTATATTCTTCGCCACTCATTTCAGATGTGTCATAGCTGATATTTAAGATGTATCTTTACACGAAGCAGatacacaatgttttttttatctcataatgagatgcatgtatatttatttttatattaaaatatttgtatgttt

Function


symbol description
il21 Predicted to enable cytokine receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in asthma; common variable immunodeficiency; hepatocellular carcinoma; and systemic lupus erythematosus. Orthologous to human IL21 (interleukin 21).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005126 cytokine receptor binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04659 Th17 cell differentiation
ko05321 Inflammatory bowel disease
ko04052 Cytokines and growth factors

ZFIN:

id description
ZDB-GENE-120510-4 Predicted to enable cytokine receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in asthma; common variable immunodeficiency; hepatocellular carcinoma; and systemic lupus erythematosus. Orthologous to human IL21 (interleukin 21).

Ensembl:

ensembl_id ENSDARG00000067847

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00014923 True 1220 mRNA 0.43 6 1303930 1313480

Neighbor


gene id symbol gene type direction distance location
XLOC_007612 CABZ01081490.1 coding downstream 23023 1274301 ~ 1280907 (-)
XLOC_007611 srp72 coding downstream 75240 1203608 ~ 1228690 (-)
XLOC_007610 arl9 coding downstream 103076 1192314 ~ 1200854 (-)
XLOC_007609 FQ311908.1 coding downstream 205323 1070028 ~ 1098607 (-)
XLOC_007608 NA coding downstream 244396 1058344 ~ 1059534 (-)
XLOC_007614 cetn4 coding upstream 34585 1348065 ~ 1355544 (-)
XLOC_007615 zgc:152774 coding upstream 89078 1402558 ~ 1454413 (-)
XLOC_007616 CABZ01109481.1 coding upstream 210740 1524220 ~ 1535430 (-)
XLOC_007617 CABZ01109480.1 coding upstream 224056 1537536 ~ 1543834 (-)
XLOC_007618 CABZ01064248.1 coding upstream 250505 1563985 ~ 1565317 (-)
XLOC_007639 CU855896.3 misc upstream 1093465 2406945 ~ 2407072 (-)
XLOC_007640 CU855896.2 misc upstream 1093848 2407328 ~ 2407431 (-)
XLOC_007641 CU855896.1 misc upstream 1094256 2407736 ~ 2407840 (-)
XLOC_007607 NA non-coding downstream 300532 1003048 ~ 1003398 (-)
XLOC_007605 NA non-coding downstream 333077 933003 ~ 970853 (-)
XLOC_007604 CU928046.1 non-coding downstream 404738 863031 ~ 899192 (-)
XLOC_007597 NA non-coding downstream 639810 634038 ~ 664120 (-)
XLOC_007622 CABZ01029590.1 non-coding upstream 382244 1695724 ~ 1695842 (-)
XLOC_007623 NA non-coding upstream 493856 1807336 ~ 1839902 (-)
XLOC_007624 NA non-coding upstream 547878 1861358 ~ 1862009 (-)
XLOC_007625 NA non-coding upstream 554894 1868374 ~ 1874047 (-)
XLOC_007642 NA non-coding upstream 1198371 2511851 ~ 2520897 (-)

Expression



Co-expression Network