XLOC_007649 (slc35a4)


Basic Information

Item Value
gene id XLOC_007649
gene name slc35a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 3062608 ~ 3071638 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015010
TTTCTGCAGTATGGCGGAGGACAAGGATCCAGTGACCAAACTGAAGGATCTTGTTCATCTCAAAGACCAGCTGGAGGAGATCCAGAAGAAGGTGGAGAATGAGGTTCAAGCTGGAGTCCCACAGggtGGCTCATTATTAGCATCTCCATTTCTGAAAGGTTTTCTGGCCGGGTATGTGGTGTCCAGACTGCGCTCTTCTGCTGTCCTCGGAGTGGCTTTGGGGACGCTGAGTGGGATATTCGCCGCTCAAAACTATCAGGTGCCCAACATCGAGGCCACTCTACGGGACATCCTGAACTCTCTTAAGAAAAGACCTGGAGAATAACAGCAGACCAAAGAGGAGGAGGAAACGCATCATCACCGCTGGCGTTTGTGTTATTGCCACTCCTTCCCTCAACAAAACTGCTGAtctgaatcacattttgtttTGAGGTCTATATAAGTGCCACATGACCGACCGAACATGATCGCAATCTCAGCAGATGAATCTCCAGAATCCTCTTCTCCTGCTCTCCGCCTCCGCTGGCTGTTTCTCCTGCTCCTGCTGGTGTTGATCTACGGCTCTCACGCTCCTCTGCTCTCGCTCTGCAAAACACAAGCACAGATCCCCTTCAGCGCTTCATCATGTGTGCTCCTCATCGAGACCTCCAAACTCTTCATCTCCTTCGCTTCCCTACTAGCATCCGGGAGCGTTTCTACTCTCCGAATTTCCATATCCATGACGACAGCATCCCCGTACGCCGTTCCCGCCGTCCTCTACGCCTTCAACAACCATCTAGTGGTCTTCATGCAGGCCTACATGGACCCCAGCTCCTTCCAGGTGCTCAGTAACCTCAAGATTGCCTCCACAGCTCTCCTCTATACATCATGCTTAGGAAAGCGTTTGCATCGCAGACAATGGTTTGCTATGGGCTTGCTAGTATCTGCCGGCGTTTCTCACAGCTGCTTTAGTTACGATTTGGAAGGTAAACAGGAAACGGCGGTTTACATCACTTCCTGGGGTTTGCTGTTGGTTCTTGTGTATTGTTTTGTGTCGGGTTTGGCTGCCGTTTATACCGAACGCGTGCTGAAAAGCCAACGTCTGCCGTTGAGCATGCAGAATCTGTTTCTGTACGCGTTCGGTGTTGTGGTCAATCTGGCGTCACATCTGTCCGGCGGGGAACAGAAAGGGTTTTTTGAGGGTTATTCGGCTGTGGTTTGGGTTATTGTCGCCGGACAGGTTGCCAATGGACTGCTTATGTCTGTGGTCATGAAACATGGAACGGGAATCACACGTTTGTTTGTGATTTCGTCAGCGATGCTAGTCAATGCTGTGTTGTCCTGGGGGATTCTGGGAGTTCAGCTTACTGGGTACTTCCTGTTTCCTGTTGTGCTGATTGGATGGGCGGTGTACCTGTATTATACGTAAAGGAGTAACCACTGACAACCGCATTTAAGTAATTGCTTTATAAAATCAGATCATTATTGGCCTTTAGAttgtaaaacaaatgtattttatttttttatgtagtagtattagtagcagAAGTAGGAGGAAGTGTTAGAATTCGATACCAattggtactgaagttttaaaaacgtccattttccGCTAATATTCGAGCGCTGTTGAgctcgttcttaaacagcgctgatttgccttTGTGTTCAGGTGCTTAACGGAaaggactgtgattggccgtgaagtaggtttgggcgatgtcgaccatttttgcatcgtacaatgtcttatatgaaacatcgcgatgaacgatggcatcgtcgtaATTAGCGGAGGTGAATTAatcatttatgaataattaattaagtcatggcggcgcagtgggtagcacgttcgccttacatcaagaaggtcgctgggtcgctggttcgatcctcggctcagttggtgtttctgtgtggagtttgaattttctccctgccttcgcgtgggtttcctccgggtactccagtttcccccacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtctgtagtgtatgagtgtgtgtgtgtgtatgtgtgcatgtttcccagaaatgggttgcggctggaatggcatccgctgcgtaaaaaattgctggataagttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgacaagaaaattaatgaatgaatgaataattaattaagtcATAAcgaagttattatttgtagcctaatgtttcaactacctgaccctcatggtctttgttttacccattaacaaatcataaataaataaagataagctgcacacaaattaccacctgtcaatcactttttccgcgggagGTTGGTCGgttaaaaaggtgcacaaccaacagtatctgaggttttcactaaaaaaattactaagtacaagtgtgaaagtaaaagactgaagcagtgtactgacgctgtgacacgttacctgctAGATTCAAgagacagaagagtcgttagatagagacaagattaattaaacatcacgtttaacaactgtattgagacacgatccagcggtacatcctttataaactgtctgacgtgcactgctctctggagctcaggcgagcgcatgacagtgtgtgtggctgtgtgtgtgtggtcacgtgaaaTAAAATGTTCAGCTGAAATAAAatgctgttcagaaatgctagatgtaACGTCAGTGTGGATATGGATCATTTtcgtattaaaatggcatttaaaagtaagacatattagtgtaaacgaggcctaaaTGTGTATTTTTCGGGAGCGGGCTTGCGTTGGTGGTGGGGTGGAGGATCGGccatgccggctcagcatcgatttgtctattggccatcggcgatggacgatggcatcgtctatcggcccaaccctactgtgaaggtcatcagttcaccaaactcaccgctgtttactgagtgtaaccacaatTACAGGGAAACGAGCATTTTAAAGCTGGGAAGATCAGCTGGTCTGCATATAAGCTGACATAAGATAGATCCGCTGATGAagcgactgatcttcacggctttaaactgtcttttttttgcttttttattatttttttacatactgTATGCTGAAGCAGCATCTCTGATTATTTCATATccctcttttgttgttgttgttcagcaAGAGTCTTTATATATCCCTCTGCCTTTGTCCTCATTCTGGAGGTGCATCTTACTGTGAACATCTCATGAATAAGACTGAATgtcgttttttttctgttgtatgcatttattttgctCAAATGTGTTGAAATGAATACATGTGGTGCAGCGTACATATTGtatgatttatgcaaataaatatgACAGATAATTTTCA
>TCONS_00015011
TCTAGTCGAATTTGTCAGCACACCGGCGGGATCCAGTGACCAAACTGAAGGATCTTGTTCATCTCAAAGACCAGCTGGAGGAGATCCAGAAGAAGGTGGAGAATGAGGTTCAAGCTGGAGTCCCACAGggtGGCTCATTATTAGCATCTCCATTTCTGAAAGGTTTTCTGGCCGGGTATGTGGTGTCCAGACTGCGCTCTTCTGCTGTCCTCGGAGTGGCTTTGGGGACGCTGAGTGGGATATTCGCCGCTCAAAACTATCAGGTGCCCAACATCGAGGCCACTCTACGGGACATCCTGAACTCTCTTAAGAAAAGACCTGGAGAATAACAGCAGACCAAAGAGGAGGAGGAAACGCATCATCACCGCTGGCGTTTGTGTTATTGCCACTCCTTCCCTCAACAAAACTGCTGAtctgaatcacattttgtttTGAGGTCTATATAAGTGCCACATGACCGACCGAACATGATCGCAATCTCAGCAGATGAATCTCCAGAATCCTCTTCTCCTGCTCTCCGCCTCCGCTGGCTGTTTCTCCTGCTCCTGCTGGTGTTGATCTACGGCTCTCACGCTCCTCTGCTCTCGCTCTGCAAAACACAAGCACAGATCCCCTTCAGCGCTTCATCATGTGTGCTCCTCATCGAGACCTCCAAACTCTTCATCTCCTTCGCTTCCCTACTAGCATCCGGGAGCGTTTCTACTCTCCGAATTTCCATATCCATGACGACAGCATCCCCGTACGCCGTTCCCGCCGTCCTCTACGCCTTCAACAACCATCTAGTGGTCTTCATGCAGGCCTACATGGACCC
>TCONS_00015012
GTCAGCACACCGGCGGGTAAGCCGCGGGATCCACCACCCGGGTCATGTGTGTGCGAGGAGTGAGAGTTGAGCCGGTGTTTTAGCGTGTGTTTCCCGCAGAATAGTGCGGTAAAATGGCGGAGGAGAGATCAGATGAACGACTGGAGGCCCAATGAGAGTTTGATCCACGAATGAGATCCAGTGACCAAACTGAAGGATCTTGTTCATCTCAAAGACCAGCTGGAGGAGATCCAGAAGAAGGTGGAGAATGAGGTTCAAGCTGGAGTCCCACAGggtGGCTCATTATTAGCATCTCCATTTCTGAAAGGTTTTCTGGCCGGGTATGTGGTGTCCAGACTGCGCTCTTCTGCTGTCCTCGGAGTGGCTTTGGGGACGCTGAGTGGGATATTCGCCGCTCAAAACTATCAGGTGCCCAACATCGAGGCCACTCTACGGGACATCCTGAACTCTCTTAAGAAAAGACCTGGAGAATAACAGCAGACCAAAGAGGAGGAGGAAACGCATCATCACCGCTGGCGTTTGTGTTATTGCCACTCCTTCCCTCAACAAAACTGCTGAtctgaatcacattttgtttTGAGGTCTATATAAGTGCCACATGACCGACCGAACATGATCGCAATCTCAGCAGATGAATCTCCAGAATCCTCTTCTCCTGCTCTCCGCCTCCGCTGGCTGTTTCTCCTGCTCCTGCTGGTGTTGATCTACGGCTCTCACGCTCCTCTGCTCTCGCTCTGCAAAACACAAGCACAGATCCCCTTCAGCGCTTCATCATGTGTGCTCCTCATCGAGACCTCCAAACTCTTCATCTCCTTCGCTTCCCTA
>TCONS_00015013
ATCGGTCCAAGTCTAGTCGAATTTGTCAGCACACCGGCGGGTAAGCCGCGGGATCCACCACCCGGGTCATGTGTGTGCGAGGAGTGAGAGTTGAGCCGGTGTTTTAGCGTGTGTTTCCCGCAGAATAGTGCGGTAAAATGGCGGAGGAGAGATCAGATGAACGACTGGAGGCCCAATGAGAGTTTGATCCACGAATGAGATCCAGTGACCAAACTGAAGGATCTTGTTCATCTCAAAGACCAGCTGGAGGAGATCCAGAAGAAGGTGGAGAATGAGGTTCAAGCTGGAGTCCCACAGggtGGCTCATTATTAGCATCTCCATTTCTGAAAGGTTTTCTGGCCGGGTATGTGGTGTCCAGACTGCGCTCTTCTGCTGTCCTCGGAGTGGCTTTGGGGACGCTGAGTGGGATATTCGCCGCTCAAAACTATCAGGTGCCCAACATCGAGGCCACTCTACGGGACATCCTGAACTCTCTTAAGAAAAGACCTGGAGAATAACAGCAGACCAAAGAGGAGGAGGAAACGCATCATCACCGCTGGCGTTTGTGTTATTGCCACTCCTTCCCTCAACAAAACTGCTGAtctgaatcacattttgtttTGAGGTCTATATGTAAGTGTGGATTGGGGACTGGGATGAAAAATGGGCATTATGTTGGGCTTCATGATTTACTGTTGTAAAACAAATTTCGATTAGACTTGTTGTGATTGTCGAATCACAAAGGATGAgactgaaataaattaataatcatgCTGCTAAAAGTTTAACTTTGATTAAtatcatccaaaataaaagtgaatttttaca
>TCONS_00015014
GCGGCCAATGAGCGCGTGTCTTATTGAAGACTTACCCGAAGGAGCGCAGGATCGGTCCAAGTCTAGTCGAATTTGTCAGCACACCGGCGGGATCCAGTGACCAAACTGAAGGATCTTGTTCATCTCAAAGACCAGCTGGAGGAGATCCAGAAGAAGGTGGAGAATGAGGTTCAAGCTGGAGTCCCACAGggtGGCTCATTATTAGCATCTCCATTTCTGAAAGGTTTTCTGGCCGGGTATGTGGTGTCCAGACTGCGCTCTTCTGCTGTCCTCGGAGTGGCTTTGGGGACGCTGAGTGGGATATTCGCCGCTCAAAACTATCAGGTGCCCAACATCGAGGCCACTCTACGGGACATCCTGAACTCTCTTAAGAAAAGACCTGGAGAATAACAGCAGACCAAAGAGGAGGAGGAAACGCATCATCACCGCTGGCGTTTGTGTTATTGCCACTCCTTCCCTCAACAAAACTGCTGAtctgaatcacattttgtttTGAGGTCTATATGTAAGTGTGGATTGGGGACTGGGATGAAAAATGGGCATTATGTTGGGCTTCATGATTTACTGTTGTAAAACAAATTTCGATTAGACTTGTTGTGATTGTCGAATCACAAAGGATGAgactgaaataaattaataatcatgCTGCTAAAAGTTTAACTTTGATTAAtatcatccaaaataaaagtgaatttttaca
>TCONS_00015015
ATGGCGGAGGACAAGGATCCAGTGACCAAACTGAAGGATCTTGTTCATCTCAAAGACCAGCTGGAGGAGATCCAGAAGAAGGTGGAGAATGAGGTTCAAGCTGGAGTCCCACAGggtGGCTCATTATTAGCATCTCCATTTCTGAAAGGTTTTCTGGCCGGGTATGTGGTGTCCAGACTGCGCTCTTCTGCTGTCCTCGGAGTGGCTTTGGGGACGCTGAGTGGGATATTCGCCGCTCAAAACTATCAGGTGCCCAACATCGAGGCCACTCTACGGGACATCCTGAACTCTCTTAAGAAAAGACCTGGAGAATAA

Function

symbol description
slc35a4 Predicted to enable pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi apparatus. Predicted to be integral component of Golgi membrane. Orthologous to human SLC35A4 (solute carrier family 35 member A4).

GO:

id name namespace
GO:0008643 carbohydrate transport biological_process
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-061103-595 Predicted to enable pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi apparatus. Predicted to be integral component of Golgi membrane. Orthologous to human SLC35A4 (solute carrier family 35 member A4).

Ensembl:

ensembl_id ENSDARG00000062379

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015010 False 3346 mRNA 0.45 4 3062608 3070623
TCONS_00015011 False 811 mRNA 0.52 4 3065147 3071577
TCONS_00015012 False 825 mRNA 0.52 4 3065278 3071564
TCONS_00015013 False 808 processed_transcript 0.46 3 3066633 3071588
TCONS_00015014 False 700 processed_transcript 0.45 3 3066633 3071638
TCONS_00015015 True 315 mRNA 0.51 3 3066943 3070613

Neighbor

gene id symbol gene type direction distance location
XLOC_007648 ndst1a coding downstream 30592 2986680 ~ 3032016 (-)
XLOC_007647 bicc2 coding downstream 82730 2941797 ~ 2979878 (-)
XLOC_007645 spock1 coding downstream 129342 2661646 ~ 2933266 (-)
XLOC_007646 NA coding downstream 209353 2851570 ~ 2853255 (-)
XLOC_007644 etf1a coding downstream 460163 2589465 ~ 2602445 (-)
XLOC_007650 si:zfos-1069f5.1 coding upstream 51879 3123517 ~ 3134836 (-)
XLOC_007651 csf1ra coding upstream 71699 3143337 ~ 3180947 (-)
XLOC_007652 pdgfrb coding upstream 114847 3186485 ~ 3268155 (-)
XLOC_007653 CABZ01073834.1 coding upstream 254229 3325867 ~ 3359054 (-)
XLOC_007654 NA coding upstream 291156 3362794 ~ 3381303 (-)
XLOC_007641 CU855896.1 misc downstream 654768 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 655177 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 655536 2406945 ~ 2407072 (-)
XLOC_007642 NA non-coding downstream 541711 2511851 ~ 2520897 (-)
XLOC_007625 NA non-coding downstream 1188561 1868374 ~ 1874047 (-)
XLOC_007624 NA non-coding downstream 1200599 1861358 ~ 1862009 (-)
XLOC_007623 NA non-coding downstream 1222706 1807336 ~ 1839902 (-)
XLOC_007660 BX088718.2 non-coding upstream 1089217 4160855 ~ 4163421 (-)
XLOC_007663 NA non-coding upstream 1215615 4287253 ~ 4287995 (-)
XLOC_007666 NA non-coding upstream 1524865 4596503 ~ 4599936 (-)

Expression


Co-expression Network