XLOC_007645 (spock1)


Basic Information

Item Value
gene id XLOC_007645
gene name spock1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 2661646 ~ 2933266 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015004
GAAGTGGGCGGAGTTACGGTTGAGAGTGGGCGGACACGCGCACCGTTCCATTACACGGCTCCGTTTCTCTCGGTCGCGCTCAGTGCAGCAGGATCTGAGGAAACTCTCGGTACTCTCCCGTGTCTCGGATACTTTACGGTCCCACAGACGGAGCTCCAATCACTCGTTCCGTTTGGAACCGAGGACTCTCCCACGTTTTAAGGTGAGTGAAGCAAACAAACAGTCGAAGCTAATTAAAGCAGACGCCAGCTCGTGCCCGAGGAGAGTGGCCGTTAAAGTCCGTTATTATTATTCGCTTGTTGTCAGTCAGCCTCAGGATTTTCTCCTCGGGGACGATTAATTATATCAGATAAACATATTCAGCGGATTTATAATCCAGAAATAATCCTCACCCTGTGCCCGTGACGCTTTGGAGTTGTTTATTGGATAAGAACTAACGTGagctttttaatatttaatattattgggCGTGTTTAAACGGAAGTCGTCTCGAAAGGGTTGTTGGCGTCTTTACCTCAGGTGCCCTGTCTGTCTAATTTTACCCGCTgtcctctctctgtctttctcagATGATGTTGAGTCTAGGTTTGTTCGTGTCTCTGGTGGGTTTGACGGTGTCCGTTACCGGCAGCAGTGACGGGAACCCGCTGGACAATGATAAGTGGATGAGCACCGTGTCCCAGTACGACAAGAGCAAATACTGGAACAAATTCCGCGACGACGATTACTTCAGAACCTGGAACCCAAACAAAGCACAAGACCAAGAACATGCACCAAACCAACGGACCGAACTGAACCATAAATCACACTCAAAGACCAAGAGCAGAACTACTGATGGGCTGGACAGCACTAAAGACCCCTGCATGAAGGTTCACTGTCCTCCTCACAAAGTGTGTGTGAGTCACGACTACCAGACCGCCATCTGCACCAATCACAAGCCAGCTCAGCACAGTGTTAAAGCCAAAAAAGGAAATATCCCTCATAAGCGTTGGATGGGAGCTGTGAATCATGGGAAATGTAGGCCATGTCCTGTTGTTCACTCCAGTTTGGTGTGCGGTTCTGACGGACACACGTATGCCTCAAAGTGTAAGCTGGAGTTCCAGGCCTGCAGCTCTGGGAAGAGTCTGTCTGCGAAGTGTGAGGGTCCGTGCCCTTGCCTGCCCGGACAGGAAGTCATTAAACCACACACAGAGAAGAACGGGTGCACTGATGCTGATCTGAGAAGTTTAGCCTCCAGACTCAAAGACTGGTTTGGGGTGTTACACACAGACGCAAACCGAGACCTGAAGACCAGCACCAGTGAAGCTGCACAAGGacGTTTCGACACAAGCATTTTACCCATCTGTAAAGATTCTCTCGGCTGGATGTTCAACAAGCTGGACATGAACTATGACCTCCTCCTCGACCAATCAGAGCTCAGTGCTATTTACCTGGACAAATACGAGCTGTGCATGAGGCCGCTGTTCAACTCCTGCGACTCCTTTAAAGATGGAAAACTGTCCAACAACGAGTGGTGCTACTGCTTCCAGAAACCCGATGGCATGCCATGTCAGAACGAGATGAACAAGATTCACTCTCAGAGCCGAAGGAAGACTCTGTTAGGAGTGTATGTGCCGCGCTGCACTGAGGACGGTTATTTTAAGGCCACTCAGTGTCATGGCAGCACCGGTCAGTGCTGGTGTGTGGACAAATACGGCAATGAGCTCGCAGGATCCCGCAGACAGGGCAACCCTACCTGTGaggagGATCAGGAGACATCTGGAGATTTCGGCAGCGGCGGCGGCGCAGTCATTCTACTTGACGACCAAGAGGAAGAAGAGTCTGCACAGAGTGGGCGTAGCCGACAGAAAGAGAGGCGGGGTCGACTCCACCCCCGCGGGGCCATCGAAGACGACGAAGACGGAGAGGACGACGAGTTTGGCTACGTCTGGTAG
>TCONS_00015003
GAAGTGGGCGGAGTTACGGTTGAGAGTGGGCGGACACGCGCACCGTTCCATTACACGGCTCCGTTTCTCTCGGTCGCGCTCAGTGCAGCAGGATCTGAGGAAACTCTCGGTACTCTCCCGTGTCTCGGATACTTTACGGTCCCACAGACGGAGCTCCAATCACTCGTTCCGTTTGGAACCGAGGACTCTCCCACGTTTTAAGATGATGTTGAGTCTAGGTTTGTTCGTGTCTCTGGTGGGTTTGACGGTGTCCGTTACCGGCAGCAGTGACGGGAACCCGCTGGACAATGATAAGTGGATGAGCACCGTGTCCCAGTACGACAAGAGCAAATACTGGAACAAATTCCGCGACGACGATTACTTCAGAACCTGGAACCCAAACAAAGCACAAGACCAAGAACATGCACCAAACCAACGGACCGAACTGAACCATAAATCACACTCAAAGACCAAGAGCAGAACTACTGATGGGCTGGACAGCACTAAAGACCCCTGCATGAAGGTTCACTGTCCTCCTCACAAAGTGTGTGTGAGTCACGACTACCAGACCGCCATCTGCACCAATCACAAGCCAGCTCAGCACAGTGTTAAAGCCAAAAAAGGAAATATCCCTCATAAGCGTTGGATGGGAGCTGTGAATCATGGGAAATGTAGGCCATGTCCTGTTGTTCACTCCAGTTTGGTGTGCGGTTCTGACGGACACACGTATGCCTCAAAGTGTAAGCTGGAGTTCCAGGCCTGCAGCTCTGGGAAGAGTCTGTCTGCGAAGTGTGAGGGTCCGTGCCCTTGCCTGCCCGGACAGGAAGTCATTAAACCACACACAGAGAAGAACGGGTGCACTGATGCTGATCTGAGAAGTTTAGCCTCCAGACTCAAAGACTGGTTTGGGGTGTTACACACAGACGCAAACCGAGACCTGAAGACCAGCACCAGTGAAGCTGCACAAGGacGTTTCGACACAAGCATTTTACCCATCTGTAAAGATTCTCTCGGCTGGATGTTCAACAAGCTGGACATGAACTATGACCTCCTCCTCGACCAATCAGAGCTCAGTGCTATTTACCTGGACAAATACGAGCTGTGCATGAGGCCGCTGTTCAACTCCTGCGACTCCTTTAAAGATGGAAAACTGTCCAACAACGAGTGGTGCTACTGCTTCCAGAAACCCGATGGCATGCCATGTCAGAACGAGATGAACAAGATTCACTCTCAGAGCCGAAGGAAGACTCTGTTAGGAGTGTATGTGCCGCGCTGCACTGAGGACGGTTATTTTAAGGCCACTCAGTGTCATGGCAGCACCGGTCAGTGCTGGTGTGTGGACAAATACGGCAATGAGCTCGCAGGATCCCGCAGACAGGGCAACCCTACCTGTGaggagGATCAGGAGACATCTGGAGATTTCGGCAGCGGCGGCGGCGCAGTCATTCTACTTGACGACCAAGAGGAAGAAGAGTCTGCACAGAGTGGGCGTAGCCGACAGAAAGAGAGGCGGGGTCGACTCCACCCCCGCGGGGCCATCGAAGACGACGAAGACGGAGAGGACGACGAGTTTGGCTACGTCTGGTAG
>TCONS_00016339
CAGGATTTTCTCCTCGGGGACGATTAATTATATCAGATAAACATATTCAGCGGATTTATAATCCAGAAATAATCCTCACCCTGTGCCCGTGACGCTTTGGAGTTGTTTATTGGATAAGAACTAACATGATGTTGAGTCTAGGTTTGTTCGTGTCTCTGGTGGGTTTGACGGTGTCCGTTACCGGCAGCAGTGACGGGAACCCGCTGGACAATGATAAGTGGATGAGCACCGTGTCCCAGTACGACAAGAGCAAATACTGGAACAAATTCCGCGACgacctgaGAAGTTTTACTGGACCCTGTTTCCTGACTGATTCCTGCCCTGTTGGATTCACCTGAACATTATTTACTTGTAAcaatagggctatgttttcataATGAGCCACTGTTATCACCatgttgtgtttatatttatgaatatgtt
>TCONS_00016340
GTTACGGTTGAGAGTGGGCGGACACGCGCACCGTTCCATTACACGGCTCCGTTTCTCTCGGTCGCGCTCAGTGCAGCAGGATCTGAGGAAACTCTCGGTACTCTCCCGTGTCTCGGATACTTTACGGTCCCACAGACGGAGCTCCAATCACTCGTTCCGTTTGGAACCGAGGACTCTCCCACGTTTTAAGATGATGTTGAGTCTAGGTTTGTTCGTGTCTCTGGTGGGTTTGACGGTGTCCGTTACCGGCAGCAGTGACGGGAACCCGCTGGACAATGATAAGTGGATGAGCACCGTGTCCCAGTACGACAAGAGCAAATACTGGAACAAATTCCGCGACgacctgaGAAGTTTTACTGGACCCTGTTTCCTGACTGATTCCTGCCCTGTTGGATTCACCTGAACATTATTTACTTGTAAcaatagggctatgttttcataATGAGCCACTGTTATCACCatgttgtgtttatatttatgaatatgtt
>TCONS_00015005
AGTGCAGCAGGATCTGAGGAAACTCTCGGTACTCTCCCGTGTCTCGGATACTTTACGGTCCCACAGACGGAGCTCCAATCACTCGTTCCGTTTGGAACCGAGGACTCTCCCACGTTTTAAGATGATGTTGAGTCTAGGTTTGTTCGTGTCTCTGGTGGGTTTGACGGTGTCCGTTACCGGCAGCAGTGACGGGAACCCGCTGGACAATGATAAGTGGATGAGCACCGTGTCCCAGTACGACAAGAGCAAATACTGGAACAAATTCCGCGAC

Function

symbol description
spock1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human SPOCK1 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110428-1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human SPOCK1 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1).

Ensembl:

ensembl_id ENSDARG00000074644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015004 False 1934 mRNA 0.51 11 2661646 2933266
TCONS_00015003 False 1567 mRNA 0.53 12 2661646 2933266
TCONS_00016339 False 423 lncRNA 0.43 3 2905260 2932953
TCONS_00016340 False 488 lncRNA 0.49 3 2905260 2933254
TCONS_00015005 True 271 mRNA 0.53 2 2932548 2933185

Neighbor

gene id symbol gene type direction distance location
XLOC_007644 etf1a coding downstream 59201 2589465 ~ 2602445 (-)
XLOC_007643 fbxw11a coding downstream 73430 2549313 ~ 2588216 (-)
XLOC_007642 NA coding downstream 140749 2511851 ~ 2520897 (-)
XLOC_007638 si:ch73-233f7.1 coding downstream 260978 2382690 ~ 2400668 (-)
XLOC_007637 si:ch73-233f7.3 coding downstream 296885 2362347 ~ 2364761 (-)
XLOC_007647 bicc2 coding upstream 8531 2941797 ~ 2979878 (-)
XLOC_007648 ndst1a coding upstream 53414 2986680 ~ 3032016 (-)
XLOC_007649 slc35a4 coding upstream 129342 3062608 ~ 3071638 (-)
XLOC_007650 si:zfos-1069f5.1 coding upstream 190251 3123517 ~ 3134836 (-)
XLOC_007651 csf1ra coding upstream 210071 3143337 ~ 3180947 (-)
XLOC_007641 CU855896.1 misc downstream 253806 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 254215 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 254574 2406945 ~ 2407072 (-)
XLOC_007625 NA non-coding downstream 787599 1868374 ~ 1874047 (-)
XLOC_007624 NA non-coding downstream 799637 1861358 ~ 1862009 (-)
XLOC_007623 NA non-coding downstream 821744 1807336 ~ 1839902 (-)
XLOC_007622 CABZ01029590.1 non-coding downstream 965804 1695724 ~ 1695842 (-)
XLOC_007653 CABZ01073834.1 non-coding upstream 392601 3325867 ~ 3359054 (-)
XLOC_007654 NA non-coding upstream 429528 3362794 ~ 3381303 (-)
XLOC_007660 BX088718.2 non-coding upstream 1227589 4160855 ~ 4163421 (-)
XLOC_007663 NA non-coding upstream 1353987 4287253 ~ 4287995 (-)
XLOC_007666 NA non-coding upstream 1663237 4596503 ~ 4599936 (-)

Expression


Co-expression Network