XLOC_007637 (si:ch73-233f7.3)


Basic Information

Item Value
gene id XLOC_007637
gene name si:ch73-233f7.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 2362347 ~ 2364761 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014991
ATGAGAATGGCATCATTTATGGACGCGCAAAAATGGAGAAGGTACGTTTGGTTATTTCTGGTCATCTCTGCTGTGTTTAACTCAGCATTTGCTGTTACGCATTACTCTATTCCCGAGGAAATGGAGGTTGGATCGGTCGTTGCGAATTTAGCCACTGATCTCGGTTTGGATGTACAAAGTCTGACAAAACGCAGGATGCGCCTGGATGTGATCGCAAATAAAAAATATCTGGATATAAATAAAGAAACGGGGGAGCTGTTCATCGTCGAAAAGATAGACAGAGAATATCTCTGCCCGGCCAAAACAAGTTCATGTTTTCTAAAGCTTGATGCAACAATAGAAAATCCAATTAGGATGTTTAATATTGAAATAGAAATACTGGATATTAATGACAATTCACCCCATTTTCGACGAGACGTCATGCATTTAGACATTTCAGAGTCGACGCCAGCCGGAGAGCGTTTCTCTCTCAACAATGCAGTGGATTCAGATATTGGATCTAATTCAATCAAGACCTACTATCTTAGCGAAAGCGATCATTTTACTATCGAAATACAGTCAGGTCGAGATGGATCTAAACTTGCTGATTTAGTACTGAAAAAGGCATTAGATCGCGAAGAACAAGCAGTCCATAATCTGATACTTACTGCTGTAGATGGCGGAGTGCCTTCGCGCTCTGGGACTGCTAATATTATTGTTCAAGTGCTAGACACCAATGACAACGCCCCTCAATTCGACAAAGACAGTTATACTGTACACTTAAGTGAAAATGCTCCTATTGGGAGTCTTGTTGTGAAATTAAATGCAACAGATTTAGACGAAGGCCAAAATTCAGAAATTGTGTACACATTCAGTTTGTACACCTCAGAGAAGACGCAAGAGACATTCAATTTAAACTCAGAAACTGGAGAAATTCGAGTTAAAGAGATTATAAATTATGAAGATTTCAAAATCTATAATATGGAAGTAATAGCGACAGATAAAGCATCTAATAGTCTCACAGGGAAATGTAAACTAACCATTTTAATCACAGATATGAATGATAATCATCCTGAAATCTCCATCAGATCAGTCACAAGTCCAGTTAAAGAGGATGTGGCTGTAAACACAGTGATTGCAGTTGTTAGTGTGAGTGATAAAGACTCTGGAGAGAATGGACAGGTAGACATTCATATCTCTGCTGATTTACCTTTTGCGCTTAAAGAATCCtctgataattattatgaattattagttTCAGAGCCGTTAGACCGTGAAAAGCTTCCAGAATATGACATCACTATCACCGTGACTGACAGGGGCAACCCGCCGTTATTTGATAATGAAACTATCACTTTAGAGCTGCTGGACGTGAACGACAATGTTCCTCAGTTCCCACAGACTTTCTACACTATACCAGTAATGGAGAATAACGCGCCTGGAGCTTCACTGAGCTCTATAACTGCTGTAGACCCAGATCTCCATGAAAATCAGTATCTGGTTTATTTCATCATAGAGAAGGAAATAGCCAACACCTCCATGTCCATGCTGTTCTCCATTAACCCGGAGAACGGCAATCTTTACGCGCTAAAGACGTTTGATTATGAGATAGAGAAGGATTTTCTGTTCCACATCGAGGCCAGAGACTCTGGTGTTCCTCCGCTCAGCAGTAACGTGACCGTTCACATTATTATCATGGACCAGAACGACAACACACCGCTTATAGTGTCTCCGTGGCGCGCGCAGGGCTCCGAGGTGAAGGAAACCATCCCGAGATCCACCGATAAAGGAACTCTGATCGCCAAAGTCATCGCCATAGACTCTGATTCAGTGCACAACTCTCGCATCACCTACCAGTTTCTCCAGAACACCGACGCTACGTTATTCAGCTTGGATCAATACAACGGAGAGATCCGGACCATGAGGATGTTCAGCTACAGAGACTCGCGAGACCAGCGGCTGGTGGTGATCGCCAAGGACAACGGAGAGCCCGCGCTCTCTGCTACAGTCACCATCAAACTGTCTACGGTGGAGACCGCGCTTAAAACCTACACTGAGGTGCCTTTGGAGTATGACATCTTCTCGGATTTAAACCTGTATCTGGTGATCGGACTGGGCTCTGTGTCATTTCTTCTGCTCATCACTATATTGGTGACCATCGTGCTCAAGTGCCAGAAGGCGAAGCCCAGCAAAGCGGCTCCTCCGAGCAGGAACAGTGTGATCAGCGAGAGGAACTCCACCATCGCGGACTCCACTCTGGTCTCCAACGATGCCTACTGGTACAGTTTATTTCTAGCAGAGACGAGGAAAGGAAAGCTGGTGGTCAGACAGCCTGTGCCAAAGGGCGCGAGATACATCGTGTCCAGCATCCCGAGGAGCACAGGACTGACCGAGACCAGCGACTCAGCGGCTTCTACTTTACAGGTAAGGAATTAA

Function

symbol description
si:ch73-233f7.3 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to several human genes including PCDHB1 (protocadherin beta 1); PCDHB10 (protocadherin beta 10); and PCDHB11 (protocadherin beta 11).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-57 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to several human genes including PCDHB1 (protocadherin beta 1); PCDHB10 (protocadherin beta 10); and PCDHB11 (protocadherin beta 11).

Ensembl:

ensembl_id ENSDARG00000102198

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014991 True 2415 mRNA 0.44 1 2362347 2364761

Neighbor

gene id symbol gene type direction distance location
XLOC_007636 si:ch73-233f7.4 coding downstream 655 2359230 ~ 2361692 (-)
XLOC_007635 si:ch73-233f7.5 coding downstream 3573 2356243 ~ 2358774 (-)
XLOC_007634 si:ch73-233f7.6 coding downstream 6514 2353398 ~ 2355833 (-)
XLOC_007633 si:ch73-233f7.7 coding downstream 9963 2349946 ~ 2352384 (-)
XLOC_007632 si:ch73-233f7.8 coding downstream 13430 2346509 ~ 2348917 (-)
XLOC_007638 si:ch73-233f7.1 coding upstream 17929 2382690 ~ 2400668 (-)
XLOC_007642 NA coding upstream 147090 2511851 ~ 2520897 (-)
XLOC_007643 fbxw11a coding upstream 184552 2549313 ~ 2588216 (-)
XLOC_007644 etf1a coding upstream 224704 2589465 ~ 2602445 (-)
XLOC_007645 spock1 coding upstream 296885 2661646 ~ 2933266 (-)
XLOC_007639 CU855896.3 misc upstream 42184 2406945 ~ 2407072 (-)
XLOC_007640 CU855896.2 misc upstream 42567 2407328 ~ 2407431 (-)
XLOC_007641 CU855896.1 misc upstream 42975 2407736 ~ 2407840 (-)
XLOC_007625 NA non-coding downstream 488300 1868374 ~ 1874047 (-)
XLOC_007624 NA non-coding downstream 500338 1861358 ~ 1862009 (-)
XLOC_007623 NA non-coding downstream 522445 1807336 ~ 1839902 (-)
XLOC_007622 CABZ01029590.1 non-coding downstream 666505 1695724 ~ 1695842 (-)
XLOC_007608 NA non-coding downstream 1302813 1058344 ~ 1059534 (-)
XLOC_007646 NA non-coding upstream 486809 2851570 ~ 2853255 (-)
XLOC_007653 CABZ01073834.1 non-coding upstream 961106 3325867 ~ 3359054 (-)
XLOC_007654 NA non-coding upstream 998033 3362794 ~ 3381303 (-)
XLOC_007660 BX088718.2 non-coding upstream 1796094 4160855 ~ 4163421 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01053792_00000529_00001653 NA coding CI01053792 null 529 ~ 1653 (+)
eurasian perch (Perca fluviatilis) G106378 LOC108242387 non-coding NC_053121.1 CM020918.1 19945655 ~ 20052690 (-)
tiger barb (Puntius tetrazona) G96658 aff2,LOC107754505,LOC107665257,LOC107742425,LOC107703651 non-coding NC_056712.1 CM032081.1 621782 ~ 683898 (-)