XLOC_007643 (fbxw11a)


Basic Information

Item Value
gene id XLOC_007643
gene name fbxw11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 2549313 ~ 2588216 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015001
AGGACTCTTATTATCGTATAATACCAGTAAGGCTCCATCTTTTGTAGCTGTGTGTTGTTTCGCTCTTCTCTCGGGTTCACCGACGGGTTTCCATTTTCACGGTTGGATTCAGCTAGAACAACAATAATATGGATCCGGACAAGGAGGACAAAACCCTGGAGCTGATGtgTTCTCTGCCTCGTTCTGTCTGGCTGGGTTGTTCGTCGGTGGCAGAGAGTCTGTGTGCTCTCAGATGCCTGCAGAGCCTCCCCTCGTCCCGCGCACACAACCAGAACATGACGGGGATGGAGTCTCAGATTAACACAGATGAAGTTTCTCCAAAGAAGACAACAGTGTTCAAGTTAGGGAACGGTTCTTTGGCGGGTTCGAGGAAGAGGCCATCTCAAGGCAGCTTTGATAAGGAGAAAGATCTGTGCATCCAGCTGTTCGACCAGTGGTCAGAATCAGACCAGGTGGAGTTTGTGGAGCATCTGATCGCACGCATGTGTCATTATCAGCACGGACACATCAACTCCTACCTGAAGCCCATGTTACAGAGAGACTTCATCACCGCGTTGCCAGCTCGGGGTCTGGATCACATCGCTGAGAACATCCTGTCGTTCCTGGACGCTCGCTCTCTGTGCTCCGCTGAGCTGGTCTGTCGAGAGTGGCAGAGGGTCATTTCAGATGGGATGCTCTGGAAGAAGCTCATCGAGAGGATGGTGCGAACCGACCCACTGTGGAAAGGCCTGTCAGAGCGGCATCAATGGGAGAAGTATTTATTTAAGAACCGAACAAATGAGGTTCCTCCCAATTCATACTACCATTCACTTTATCCCAAAATTATTCAAGACATTGAGACTATTGAAGCGAACTGGCGGTGTGGGCGTCACAATCTCCAGCGGATCCAGTGCCGCTCAGAGAACAGTAAAGGTGTTTACTGCCTCCAGTATGATGACGACAAGATTATCAGTGGCCTGCGAGACAACTCCATCAAAATCTGGGACAAACAGTCTCTGGAGTGTCTGAAGGTTTTGACGGGTCACACTGGATCAGTCCTGTGTCTGCAGTACGACGAGAGAGTCATCGTGACGGGATCCTCCGATTCTACTGTCAGggtGTGGGACGTCAGTTCTGGTGAAGTTCTCAACACTCTGATCCATCACAACGAAGCGGTTCTGCACCTGCGCTTCTGCAACGGCCTCATGGTGACGTGTTCGAAAGATCGCTCCATCGCGGTGTGGGACATGGCGTCTGCCACCGACATCAGCCTTCGGCGTGTGCTCGTGGGTCATCGAGCTGCGGTCAATGTTGTGGACTTTGACGACAAATACATTGTGTCGGCGTCTGGAGACAGAACCATAAAGgtatGGAGCACCAGCACATGTGAGTTCGTACGAACACTTAACGGTCATAAGCGCGGCATTGCTTGTCTACAGTACAGAGACAGACTTGTGGTCAGTGGGTCTTCAGACAACACCATCAGactgtgggatATTGAGTGTGGTGCTTGTCTGCGTGTGCTTGAGGGTCACGAAGAGCTTGTGCGATGCATCCGATTCGACAACAAGAGGATCGTAAGCGGAGCATATGATGGGAAAATAAAAGTTTGGGATTTACAGGCAGCTCTGGATCCACGAGCCCCCGCCAGCACTTTATGTCTGCGCACGCTTGTGGAACATTCTGGCCGTGTGTTCCGTCTGCAGTTTGACGAGTTCCAGATCATTAGCAGTTCCCATGACGACACAATCCTTATATGGGACTTCCTGAATGTGTCCAGCAATGGGCAGTCGGACGGTCGGTCGCCCTCTCGGACATACACATACGTCTCCAGATAGCAGGTGCCTCTTCAATGTGCCAGTGTGTCCTTGGAGAGCTGAGAGCTGATTGGCTGTTGGCCACGTCTGTCACAGAATTGGTGCCTAATATGGATCCGCCTCCTTCTCCGCCTGGCTGTAAAATTcaacacacaccaacacaaacCTACACTGATTTATGCTTTgccaaacacagagaaacacacactaaCGTTTGTACGTTCAAACACTCTCACCAATGGGTTTCAGCACTGTTCTGCTTTATCTAGAGaaaaacacactcactcacactcacttATTTACAGTATCTGTACTCCCACTGCTGCTAAAACAACCCAAAATCACTGTCGCTCTGCACTACTAATATTTGACACGAGGATCACACTGTTATGGAGAAGTTGATGGGAATCTGGTAGTGCCGTACAGATGACGGATCGATGAATGAACCGGAAAAGTATTTCTGTGAGGGATAAAAGACTGGGACAATAGCAAACTCTCACAGAAATGAAAGACGAGAGGGTTAAGCTCGTCCTTTTCCCTCCGCTTGCCGTTTTTTCAGGCTCTTCAGGACCAGAGACACACTTTTTGTCGTTCAGGAGCGCGTGTTCGTCCTGTCCGCATGCATGAGGTTCAGCTGCTCTGATGCCTCTTTAGTTtttatgagtttgtttgtttgttttttctatttaatttgtcTTTCCATCTTTTCCGAACAGTTCTGCTGGGCATTGTGTGCGTCTCCGGCACTCGATGTCtgggtttttttattttattcttcctCTTCTTGCCTGCTTGCTCATCGAGGGCTGAATCTATAGCTGTAAACAGAATTGTCTTGTCAGATTGTGTTGTATATTAAAGAGTTTTTTAAGAAAAGATATTGTGAATAAAGTACTTGACCATGGTTGGTTTATTGGTCTCGAGGAAGCCGGACATGTTTTCATATCATTATCAAGTATGAGCTTGAATTCGCTGTATTATTGCATGGTATTTTGATTCAGTTGAAGGTAAAATTATTAGTCATGTTGTgagattttaataatttaaaaaaaatattttccaagtgggcatcatggtggtgcagtgggtagcacagtcgcctcatagcaagaaggtcactggtttaatccttggctgggtaagttggcgtttctttgcGGAGTTTACCTGTTCTCACATGTTCGACATTGAATCAATGTTGTATTCTCGATGTAATAACCTTCCAACGTACCAACGAACTAAAGAACATtgattattataacattattattgacatttacatttagtcatttagcagacgcttttatccaaagcaacttataaatgaggacaaggaaggcAAGGACGTgcggcaagtttcaggtatgtaaagtgtaagaagcaaaccctgctgaaaaa
>TCONS_00015000
AGGACTCTTATTATCGTATAATACCAGTAAGGCTCCATCTTTTGTAGCTGTGTGTTGTTTCGCTCTTCTCTCGGGTTCACCGACGGGTTTCCATTTTCACGGTTGGATTCAGCTAGAACAACAATAATATGGATCCGGACAAGGAGGACAAAACCCTGGAGCTGATGAACATGACGGGGATGGAGTCTCAGATTAACACAGATGAAGTTTCTCCAAAGAAGACAACAGTGTTCAAGTTAGGGAACGGTTCTTTGGCGGGTTCGAGGAAGAGGCCATCTCAAGGCAGCTTTGATAAGGAGAAAGATCTGTGCATCCAGCTGTTCGACCAGTGGTCAGAATCAGACCAGGTGGAGTTTGTGGAGCATCTGATCGCACGCATGTGTCATTATCAGCACGGACACATCAACTCCTACCTGAAGCCCATGTTACAGAGAGACTTCATCACCGCGTTGCCAGCTCGGGGTCTGGATCACATCGCTGAGAACATCCTGTCGTTCCTGGACGCTCGCTCTCTGTGCTCCGCTGAGCTGGTCTGTCGAGAGTGGCAGAGGGTCATTTCAGATGGGATGCTCTGGAAGAAGCTCATCGAGAGGATGGTGCGAACCGACCCACTGTGGAAAGGCCTGTCAGAGCGGCATCAATGGGAGAAGTATTTATTTAAGAACCGAACAAATGAGGTTCCTCCCAATTCATACTACCATTCACTTTATCCCAAAATTATTCAAGACATTGAGACTATTGAAGCGAACTGGCGGTGTGGGCGTCACAATCTCCAGCGGATCCAGTGCCGCTCAGAGAACAGTAAAGGTGTTTACTGCCTCCAGTATGATGACGACAAGATTATCAGTGGCCTGCGAGACAACTCCATCAAAATCTGGGACAAACAGTCTCTGGAGTGTCTGAAGGTTTTGACGGGTCACACTGGATCAGTCCTGTGTCTGCAGTACGACGAGAGAGTCATCGTGACGGGATCCTCCGATTCTACTGTCAGggtGTGGGACGTCAGTTCTGGTGAAGTTCTCAACACTCTGATCCATCACAACGAAGCGGTTCTGCACCTGCGCTTCTGCAACGGCCTCATGGTGACGTGTTCGAAAGATCGCTCCATCGCGGTGTGGGACATGGCGTCTGCCACCGACATCAGCCTTCGGCGTGTGCTCGTGGGTCATCGAGCTGCGGTCAATGTTGTGGACTTTGACGACAAATACATTGTGTCGGCGTCTGGAGACAGAACCATAAAGgtatGGAGCACCAGCACATGTGAGTTCGTACGAACACTTAACGGTCATAAGCGCGGCATTGCTTGTCTACAGTACAGAGACAGACTTGTGGTCAGTGGGTCTTCAGACAACACCATCAGactgtgggatATTGAGTGTGGTGCTTGTCTGCGTGTGCTTGAGGGTCACGAAGAGCTTGTGCGATGCATCCGATTCGACAACAAGAGGATCGTAAGCGGAGCATATGATGGGAAAATAAAAGTTTGGGATTTACAGGCAGCTCTGGATCCACGAGCCCCCGCCAGCACTTTATGTCTGCGCACGCTTGTGGAACATTCTGGCCGTGTGTTCCGTCTGCAGTTTGACGAGTTCCAGATCATTAGCAGTTCCCATGACGACACAATCCTTATATGGGACTTCCTGAATGTGTCCAGCAATGGGCAGTCGGACGGTCGGTCGCCCTCTCGGACATACACATACGTCTCCAGATAGCAGGTGCCTCTTCAATGTGCCAGTGTGTCCTTGGAGAGCTGAGAGCTGATTGGCTGTTGGCCACGTCTGTCACAGAATTGGTGCCTAATATGGATCCGCCTCCTTCTCCGCCTGGCTGTAAAATTcaacacacaccaacacaaacCTACACTGATTTATGCTTTgccaaacacagagaaacacacactaaCGTTTGTACGTTCAAACACTCTCACCAATGGGTTTCAGCACTGTTCTGCTTTATCTAGAGaaaaacacactcactcacactcacttATTTACAGTATCTGTACTCCCACTGCTGCTAAAACAACCCAAAATCACTGTCGCTCTGCACTACTAATATTTGACACGAGGATCACACTGTTATGGAGAAGTTGATGGGAATCTGGTAGTGCCGTACAGATGACGGATCGATGAATGAACCGGAAAAGTATTTCTGTGAGGGATAAAAGACTGGGACAATAGCAAACTCTCACAGAAATGAAAGACGAGAGGGTTAAGCTCGTCCTTTTCCCTCCGCTTGCCGTTTTTTCAGGCTCTTCAGGACCAGAGACACACTTTTTGTCGTTCAGGAGCGCGTGTTCGTCCTGTCCGCATGCATGAGGTTCAGCTGCTCTGATGCCTCTTTAGTTtttatgagtttgtttgtttgttttttctatttaatttgtcTTTCCATCTTTTCCGAACAGTTCTGCTGGGCATTGTGTGCGTCTCCGGCACTCGATGTCtgggtttttttattttattcttcctCTTCTTGCCTGCTTGCTCATCGAGGGCTGAATCTATAGCTGTAAACAGAATTGTCTTGTCAGATTGTGTTGTATATTAAAGAGTTTTTTAAGAAAAGATATTGTGAATAAAGTACTTGACCATGGTTGGTTTATTGGTCTCGAGGAAGCCGGACATGTTTTCATATCATTATCAAGTATGAGCTTGAATTCGCTGTATTATTGCATGGTATTTTGATTCAGTTGAAGGTAAAATTATTAGTCATGTTGTgagattttaataatttaaaaaaaatattttccaagtgggcatcatggtggtgcagtgggtagcacagtcgcctcatagcaagaaggtcactggtttaatccttggctgggtaagttggcgtttctttgcGGAGTTTACCTGTTCTCACATGTTCGACATTGAATCAATGTTGTATTCTCGATGTAATAACCTTCCAACGTACCAACGAACTAAAGAACATtgattattataacattattattgacatttacatttagtcatttagcagacgcttttatccaaagcaacttataaatgaggacaaggaaggcAAGGACGTgcggcaagtttcaggtatgtaaagtgtaagaagcaaaccctgctgaaaaa

Function

symbol description
fbxw11a Predicted to enable snoRNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be part of small-subunit processome. Is expressed in brain; head mesenchyme; and retina. Orthologous to human FBXW11 (F-box and WD repeat domain containing 11).

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0030515 snoRNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6305 Predicted to enable snoRNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be part of small-subunit processome. Is expressed in brain; head mesenchyme; and retina. Orthologous to human FBXW11 (F-box and WD repeat domain containing 11).

Ensembl:

ensembl_id ENSDARG00000104806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015001 False 3194 mRNA 0.47 14 2549313 2588216
TCONS_00015000 True 3089 mRNA 0.46 13 2549313 2588216

Neighbor

gene id symbol gene type direction distance location
XLOC_007642 NA coding downstream 28416 2511851 ~ 2520897 (-)
XLOC_007638 si:ch73-233f7.1 coding downstream 148645 2382690 ~ 2400668 (-)
XLOC_007637 si:ch73-233f7.3 coding downstream 184552 2362347 ~ 2364761 (-)
XLOC_007636 si:ch73-233f7.4 coding downstream 187621 2359230 ~ 2361692 (-)
XLOC_007635 si:ch73-233f7.5 coding downstream 190539 2356243 ~ 2358774 (-)
XLOC_007644 etf1a coding upstream 1249 2589465 ~ 2602445 (-)
XLOC_007645 spock1 coding upstream 73430 2661646 ~ 2933266 (-)
XLOC_007646 NA coding upstream 263354 2851570 ~ 2853255 (-)
XLOC_007647 bicc2 coding upstream 353581 2941797 ~ 2979878 (-)
XLOC_007648 ndst1a coding upstream 398464 2986680 ~ 3032016 (-)
XLOC_007641 CU855896.1 misc downstream 141473 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 141882 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 142241 2406945 ~ 2407072 (-)
XLOC_007625 NA non-coding downstream 675266 1868374 ~ 1874047 (-)
XLOC_007624 NA non-coding downstream 687304 1861358 ~ 1862009 (-)
XLOC_007623 NA non-coding downstream 709411 1807336 ~ 1839902 (-)
XLOC_007622 CABZ01029590.1 non-coding downstream 853471 1695724 ~ 1695842 (-)
XLOC_007653 CABZ01073834.1 non-coding upstream 737651 3325867 ~ 3359054 (-)
XLOC_007654 NA non-coding upstream 774578 3362794 ~ 3381303 (-)
XLOC_007660 BX088718.2 non-coding upstream 1572639 4160855 ~ 4163421 (-)
XLOC_007663 NA non-coding upstream 1699037 4287253 ~ 4287995 (-)

Expression


Co-expression Network