RNA id: TCONS_00015000


Basic Information

Item Value
RNA id TCONS_00015000
length 3089
RNA type mRNA
GC content 0.46
exon number 13
gene id XLOC_007643
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 2549313 ~ 2588216 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGACTCTTATTATCGTATAATACCAGTAAGGCTCCATCTTTTGTAGCTGTGTGTTGTTTCGCTCTTCTCTCGGGTTCACCGACGGGTTTCCATTTTCACGGTTGGATTCAGCTAGAACAACAATAATATGGATCCGGACAAGGAGGACAAAACCCTGGAGCTGATGAACATGACGGGGATGGAGTCTCAGATTAACACAGATGAAGTTTCTCCAAAGAAGACAACAGTGTTCAAGTTAGGGAACGGTTCTTTGGCGGGTTCGAGGAAGAGGCCATCTCAAGGCAGCTTTGATAAGGAGAAAGATCTGTGCATCCAGCTGTTCGACCAGTGGTCAGAATCAGACCAGGTGGAGTTTGTGGAGCATCTGATCGCACGCATGTGTCATTATCAGCACGGACACATCAACTCCTACCTGAAGCCCATGTTACAGAGAGACTTCATCACCGCGTTGCCAGCTCGGGGTCTGGATCACATCGCTGAGAACATCCTGTCGTTCCTGGACGCTCGCTCTCTGTGCTCCGCTGAGCTGGTCTGTCGAGAGTGGCAGAGGGTCATTTCAGATGGGATGCTCTGGAAGAAGCTCATCGAGAGGATGGTGCGAACCGACCCACTGTGGAAAGGCCTGTCAGAGCGGCATCAATGGGAGAAGTATTTATTTAAGAACCGAACAAATGAGGTTCCTCCCAATTCATACTACCATTCACTTTATCCCAAAATTATTCAAGACATTGAGACTATTGAAGCGAACTGGCGGTGTGGGCGTCACAATCTCCAGCGGATCCAGTGCCGCTCAGAGAACAGTAAAGGTGTTTACTGCCTCCAGTATGATGACGACAAGATTATCAGTGGCCTGCGAGACAACTCCATCAAAATCTGGGACAAACAGTCTCTGGAGTGTCTGAAGGTTTTGACGGGTCACACTGGATCAGTCCTGTGTCTGCAGTACGACGAGAGAGTCATCGTGACGGGATCCTCCGATTCTACTGTCAGggtGTGGGACGTCAGTTCTGGTGAAGTTCTCAACACTCTGATCCATCACAACGAAGCGGTTCTGCACCTGCGCTTCTGCAACGGCCTCATGGTGACGTGTTCGAAAGATCGCTCCATCGCGGTGTGGGACATGGCGTCTGCCACCGACATCAGCCTTCGGCGTGTGCTCGTGGGTCATCGAGCTGCGGTCAATGTTGTGGACTTTGACGACAAATACATTGTGTCGGCGTCTGGAGACAGAACCATAAAGgtatGGAGCACCAGCACATGTGAGTTCGTACGAACACTTAACGGTCATAAGCGCGGCATTGCTTGTCTACAGTACAGAGACAGACTTGTGGTCAGTGGGTCTTCAGACAACACCATCAGactgtgggatATTGAGTGTGGTGCTTGTCTGCGTGTGCTTGAGGGTCACGAAGAGCTTGTGCGATGCATCCGATTCGACAACAAGAGGATCGTAAGCGGAGCATATGATGGGAAAATAAAAGTTTGGGATTTACAGGCAGCTCTGGATCCACGAGCCCCCGCCAGCACTTTATGTCTGCGCACGCTTGTGGAACATTCTGGCCGTGTGTTCCGTCTGCAGTTTGACGAGTTCCAGATCATTAGCAGTTCCCATGACGACACAATCCTTATATGGGACTTCCTGAATGTGTCCAGCAATGGGCAGTCGGACGGTCGGTCGCCCTCTCGGACATACACATACGTCTCCAGATAGCAGGTGCCTCTTCAATGTGCCAGTGTGTCCTTGGAGAGCTGAGAGCTGATTGGCTGTTGGCCACGTCTGTCACAGAATTGGTGCCTAATATGGATCCGCCTCCTTCTCCGCCTGGCTGTAAAATTcaacacacaccaacacaaacCTACACTGATTTATGCTTTgccaaacacagagaaacacacactaaCGTTTGTACGTTCAAACACTCTCACCAATGGGTTTCAGCACTGTTCTGCTTTATCTAGAGaaaaacacactcactcacactcacttATTTACAGTATCTGTACTCCCACTGCTGCTAAAACAACCCAAAATCACTGTCGCTCTGCACTACTAATATTTGACACGAGGATCACACTGTTATGGAGAAGTTGATGGGAATCTGGTAGTGCCGTACAGATGACGGATCGATGAATGAACCGGAAAAGTATTTCTGTGAGGGATAAAAGACTGGGACAATAGCAAACTCTCACAGAAATGAAAGACGAGAGGGTTAAGCTCGTCCTTTTCCCTCCGCTTGCCGTTTTTTCAGGCTCTTCAGGACCAGAGACACACTTTTTGTCGTTCAGGAGCGCGTGTTCGTCCTGTCCGCATGCATGAGGTTCAGCTGCTCTGATGCCTCTTTAGTTtttatgagtttgtttgtttgttttttctatttaatttgtcTTTCCATCTTTTCCGAACAGTTCTGCTGGGCATTGTGTGCGTCTCCGGCACTCGATGTCtgggtttttttattttattcttcctCTTCTTGCCTGCTTGCTCATCGAGGGCTGAATCTATAGCTGTAAACAGAATTGTCTTGTCAGATTGTGTTGTATATTAAAGAGTTTTTTAAGAAAAGATATTGTGAATAAAGTACTTGACCATGGTTGGTTTATTGGTCTCGAGGAAGCCGGACATGTTTTCATATCATTATCAAGTATGAGCTTGAATTCGCTGTATTATTGCATGGTATTTTGATTCAGTTGAAGGTAAAATTATTAGTCATGTTGTgagattttaataatttaaaaaaaatattttccaagtgggcatcatggtggtgcagtgggtagcacagtcgcctcatagcaagaaggtcactggtttaatccttggctgggtaagttggcgtttctttgcGGAGTTTACCTGTTCTCACATGTTCGACATTGAATCAATGTTGTATTCTCGATGTAATAACCTTCCAACGTACCAACGAACTAAAGAACATtgattattataacattattattgacatttacatttagtcatttagcagacgcttttatccaaagcaacttataaatgaggacaaggaaggcAAGGACGTgcggcaagtttcaggtatgtaaagtgtaagaagcaaaccctgctgaaaaa

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0030515 snoRNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6305 Predicted to enable snoRNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be part of small-subunit processome. Is expressed in brain; head mesenchyme; and retina. Orthologous to human FBXW11 (F-box and WD repeat domain containing 11).

Ensembl:

ensembl_id ENSDART00000167293

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016337 lncRNA downstream 28416 2511851 ~ 2520897 (-) True XLOC_007642
TCONS_00016336 lncRNA downstream 428138 2118896 ~ 2121175 (-) False XLOC_007629
TCONS_00016335 lncRNA downstream 675266 1868374 ~ 1874047 (-) True XLOC_007625
TCONS_00016021 lncRNA downstream 687304 1861358 ~ 1862009 (-) True XLOC_007624
TCONS_00014939 lncRNA downstream 709411 1816294 ~ 1839902 (-) True XLOC_007623
TCONS_00016338 lncRNA upstream 263354 2851570 ~ 2853255 (-) True XLOC_007646
TCONS_00016339 lncRNA upstream 317044 2905260 ~ 2932953 (-) False XLOC_007645
TCONS_00016340 lncRNA upstream 317044 2905260 ~ 2933254 (-) False XLOC_007645
TCONS_00015021 lncRNA upstream 556516 3144732 ~ 3174559 (-) True XLOC_007651
TCONS_00015024 lncRNA upstream 737651 3325867 ~ 3357586 (-) False XLOC_007653
TCONS_00014994 mRNA downstream 148645 2387061 ~ 2400668 (-) False XLOC_007638
TCONS_00014995 mRNA downstream 148645 2392187 ~ 2400668 (-) True XLOC_007638
TCONS_00014993 mRNA downstream 149044 2382690 ~ 2400269 (-) False XLOC_007638
TCONS_00014992 mRNA downstream 179464 2367390 ~ 2369849 (-) True XLOC_007631
TCONS_00014991 mRNA downstream 184552 2362347 ~ 2364761 (-) True XLOC_007637
TCONS_00015002 mRNA upstream 1249 2589465 ~ 2602445 (-) True XLOC_007644
TCONS_00015004 mRNA upstream 73430 2661646 ~ 2933266 (-) False XLOC_007645
TCONS_00015003 mRNA upstream 73430 2661646 ~ 2933266 (-) False XLOC_007645
TCONS_00015005 mRNA upstream 344332 2932548 ~ 2933185 (-) True XLOC_007645
TCONS_00015006 mRNA upstream 353581 2941797 ~ 2979878 (-) True XLOC_007647
TCONS_00014999 other downstream 141473 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00014998 other downstream 141882 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014997 other downstream 142241 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00014996 other downstream 142265 2406945 ~ 2407048 (-) False XLOC_007639
TCONS_00014974 other downstream 335653 2123249 ~ 2213660 (-) False XLOC_007629
TCONS_00015013 other upstream 478417 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00015014 other upstream 478417 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015066 other upstream 3598498 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015075 other upstream 3669471 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015086 other upstream 4384652 6972868 ~ 6979330 (-) False XLOC_007693

Expression Profile

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