RNA id: TCONS_00015024


Basic Information

Item Value
RNA id TCONS_00015024
length 2958
lncRNA type lincRNA
GC content 0.39
exon number 6
gene id XLOC_007653
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 3325867 ~ 3359054 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcttTTTAATTATCAGGAGCAGACACACAAATGacacattttcaggaaaataaaatccaataacaCAACATTAGTCTTAAATGTAAACTCCCTGCTGGATTCTGTGAATGTTggtgtttaatttaataattataaacaatagATAACCATACCGACAACAAAACGATTGGTTGgttgacggtggccatagcaacgacaaacgtCAGGGAGGATTGTGagcttaaaacacatttaaatccgaaattaaaataaaattaaatctctctttcccactgtgtgtgtgtgtgtgtgtgtgtgtttgtgtacgtgtgcgtgtgcgtgtgtgttcagGTGTGGAGCGGTTCTGCAGTTTTACTCAGTCAGATCCCTGTTATGCAGCTCTGGGACACAAACTCAATCTGCAGATGGTGAACGCCAGTAAATATAGCCTGACCATAATAAAGAGAATAAACAACATAGATGATGCAGTTTGTAGAGTAAGAAATGACACAAAGAGAGCAAATGTATGTGATCTTTACATAAACAGACCTGAAGTGAGAATCATTAAAGGGACTGTGATGATAAACTCTGTGAAGAGAGAAGATTCAGGAAATTACAGATTAGAACTCTTTAATCCTGACGGCACAGAAACATCTCAATATCTTCAGGTGAATGTTGAAGCTCCTGTTGGCTCAGTGAAAGTGTCAATCATCTGCTCCTCCAATCAGATGAGGTCAGTGTCCTGCTCCTCTGAGGGGGATCAGCTCCTCTACAGCTGGACTCTCAATGGAGAAACACAGACAGATGGAAACTCCACCATTCAGCTTCAAGAGGAAACTAAAGGAGAAATCACCTGCACTGTGAAGAACCACGTCAGCCAAGGAAACACGACTGTTAGCATTAAAGACTGTCCTGGATCAACTACTGATGCTGTGACCTCTAGTTTGACCAcaaagacatctgaaaatggtaCGAGTCTCTCAACAGAAAAAACTACTCAAAATTACAGCTCTGGAAGTCTTTTTACACtTGCACGGTACTTATTAATCGCTATGGGCTGTGTTGCGGTGATCCTGATTCTACTGTTCATCATTGTATACTACGTTTACAGGAAGAAACAACACAAGTCACCAACACCAGCACCTCCTTCTGGAGACGTGGAGCTCATTTACACTCACATCTCTCATCAAAAAACCAACAAACAAGGTGCAGGAAAGAAAAAAGAAGCGTCTCCAGATGATGATGTGGAATATTCTGCGGTCAGAGttcagaaaaagaagaagaacaagCCGGAGGAAGAGGTTCAGTACGGAGAGGTGACGTTCAGCCCTAAACACTCAAACACCCAaaatcagcagcagcagcagcagcagccggCGGAGGAGTGTGTGTACTCAGAGGTACATAGAAGCTAGAAGAgtctgagaaacacacacacacacacacacacacacacacacacactctctgctcAGTCAGATTTACAGTCCACACACATGTGCATTAGGAGCTTGTGTATATTATGatgctttatttcagtatgttaatgaTATGTGTGGCATGTTATACTGAATactgattcattggatttacacttttttttttaaggtaaggggTTGCAAacagggtggcacagtggttatcactgtggcctcacaggaaaaaggttgctggtttagtCCAGGGTGgtccagttggcgtttctgagtagagtttgcatgttcctcccgtgttggcgtgggtttcctccgggtgattcGGTTTCCccttcagtccaaacacatgcgctataggtgaattgaataaactaattcatttgttgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgaatgagactgtatgggtgtttcccagaactgggttgcagctgtaagggcatgagctgtgtaaaaaaatataccagaatagttggtggttcattctgctgtggcgacccctgataaataagggaataagccgaaggaaaaggaataaatgatggttgcaaactatttatatgggctgaatttaaacaaactaaatttaagCTGAGCATtactatattttgtttgtttgtttaaattcaggccgtataaatagtttgcaatgacttacctttaaaaaaaagagtaaattcaatgaatcattttttttcagtgtatgaacATAGAATTGTACAGAGAAATGACATTTTGATAAATACAGAGATGCTATTAGAGTCtgagaaacgcacacacacacacacacacaaacacacttctgCTTGGTCAGATTTACAGTCCACCACACGTTTACTCACAGGTACATAGAAGCTAGAAGAATCTgagaaacacacgcacacacacacacgcgcacagtCAGATTTACAGTCCACAAACATGCGCATTGAGAGCATGTGTGAATAATGATGAGGTATTTCCGTATGTTAATGATGATGTTGATGTTGTGTGGCATGTTATGAACATAGAATTGTACATAGAGATGACATTTGTATGCTATTCCCCTGGGCTTTCTTGTCTTAATATTAAATTCAAAAAGATTTGCTGTGTTTGttggaaaataaaaataggaaGCATGCTTTAAAGTAGAGTGAAGTttgatatcattattattattattttgctgatAAAACACCCTGTATAAGTGCTGGGTTGTTTTCAGTTTTTTGGTTATATATGGACAAGTCTAACTGATGGgttacatttttacaattaatttgtaACCCAACAGGTGGGTTTgtccattttaaaccaaatattgAGTTGAAACTACCcagcatttaataaaatttgtttatgatcaaaaatacattaaccctgtaaaatatgatttactttGGCGCAActgttggataaaaaaaaaatctatttatctgTAACCCAGTTGTTGGGTTTGTCAATTTTTGATGCAGAATTGGGTTGAAGCTATCTAAAATGCTG

Function

GO:

id name namespace
GO:0061097 regulation of protein tyrosine kinase activity biological_process
GO:0004594 pantothenate kinase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194008

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015021 lncRNA downstream 151308 3144732 ~ 3174559 (-) True XLOC_007651
TCONS_00016340 lncRNA downstream 392613 2905260 ~ 2933254 (-) False XLOC_007645
TCONS_00016339 lncRNA downstream 392914 2905260 ~ 2932953 (-) False XLOC_007645
TCONS_00016338 lncRNA downstream 472612 2851570 ~ 2853255 (-) True XLOC_007646
TCONS_00016337 lncRNA downstream 804970 2511851 ~ 2520897 (-) True XLOC_007642
TCONS_00016024 lncRNA upstream 5208 3362794 ~ 3366297 (-) False XLOC_007654
TCONS_00015033 lncRNA upstream 703495 4061081 ~ 4076429 (-) True XLOC_007657
TCONS_00015036 lncRNA upstream 751326 4108912 ~ 4121007 (-) True XLOC_007658
TCONS_00015038 lncRNA upstream 803269 4160855 ~ 4163421 (-) True XLOC_007660
TCONS_00015042 lncRNA upstream 884890 4242476 ~ 4273296 (-) True XLOC_007662
TCONS_00015022 mRNA downstream 57712 3186485 ~ 3268155 (-) False XLOC_007652
TCONS_00015023 mRNA downstream 96483 3190050 ~ 3229384 (-) True XLOC_007652
TCONS_00015019 mRNA downstream 144920 3143421 ~ 3180947 (-) False XLOC_007651
TCONS_00015020 mRNA downstream 145026 3143901 ~ 3180841 (-) False XLOC_007651
TCONS_00015018 mRNA downstream 151297 3143337 ~ 3174570 (-) False XLOC_007651
TCONS_00015027 mRNA upstream 5782 3363368 ~ 3372932 (-) False XLOC_007654
TCONS_00015028 mRNA upstream 10108 3367694 ~ 3381303 (-) True XLOC_007654
TCONS_00015029 mRNA upstream 360159 3717745 ~ 3944017 (-) True XLOC_007655
TCONS_00015030 mRNA upstream 602955 3960541 ~ 4044545 (-) False XLOC_007656
TCONS_00015031 mRNA upstream 603331 3960917 ~ 4043818 (-) True XLOC_007656
TCONS_00015014 other downstream 254229 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 254279 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 918027 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00014998 other downstream 918436 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014997 other downstream 918795 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00015066 other upstream 2829128 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015075 other upstream 2900101 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015086 other upstream 3615282 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 4004163 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 5025963 8383549 ~ 8383923 (-) True XLOC_007711

Expression Profile

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