RNA id: TCONS_00016337


Basic Information

Item Value
RNA id TCONS_00016337
length 402
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id XLOC_007642
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 2511851 ~ 2520897 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGGTGCTGCCGCCGGCTCATGGCGTCCCGTGCGCGCGTCTGGTTCTCCACGTGCACGCTGAAATTCACCCCGTCCACCCCAAACACCTGCAGGCAACAGACCACACACATCCTCACCTCCAGTCCTCCTTTCTTTTTCTCTTATTCGGGAATTTTTCTGAAGTGAACTCATTGTAAAAACAGCTCTGAGCTCATCACTAGCGGAAACGCGCCATGTTGGCCTGCTCGAACCAAAAGCTATTCGTCATACATTATTAGCATTATAACCATCATATAAGGTTAACTCACCTGTAGAGGATTACACATGACCAGCATCATCTGGATATACCTGAAGAGACAAACACAGAGAGGAAGAGCAGTAAACGTCAGAGACTTATAAATAAACACTTGCAGCCAGTGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016336 lncRNA downstream 390676 2118896 ~ 2121175 (-) False XLOC_007629
TCONS_00016335 lncRNA downstream 637804 1868374 ~ 1874047 (-) True XLOC_007625
TCONS_00016021 lncRNA downstream 649842 1861358 ~ 1862009 (-) True XLOC_007624
TCONS_00016020 lncRNA downstream 671949 1807336 ~ 1839902 (-) False XLOC_007623
TCONS_00016338 lncRNA upstream 330673 2851570 ~ 2853255 (-) True XLOC_007646
TCONS_00016339 lncRNA upstream 384363 2905260 ~ 2932953 (-) False XLOC_007645
TCONS_00016340 lncRNA upstream 384363 2905260 ~ 2933254 (-) False XLOC_007645
TCONS_00015021 lncRNA upstream 623835 3144732 ~ 3174559 (-) True XLOC_007651
TCONS_00015024 lncRNA upstream 804970 3325867 ~ 3357586 (-) False XLOC_007653
TCONS_00014994 mRNA downstream 111183 2387061 ~ 2400668 (-) False XLOC_007638
TCONS_00014995 mRNA downstream 111183 2392187 ~ 2400668 (-) True XLOC_007638
TCONS_00014993 mRNA downstream 111582 2382690 ~ 2400269 (-) False XLOC_007638
TCONS_00014984 mRNA downstream 142002 2337973 ~ 2369849 (-) False XLOC_007631
TCONS_00014985 mRNA downstream 142002 2341434 ~ 2369849 (-) False XLOC_007631
TCONS_00015001 mRNA upstream 28416 2549313 ~ 2588216 (-) False XLOC_007643
TCONS_00015000 mRNA upstream 28416 2549313 ~ 2588216 (-) True XLOC_007643
TCONS_00015002 mRNA upstream 68568 2589465 ~ 2602445 (-) True XLOC_007644
TCONS_00015004 mRNA upstream 140749 2661646 ~ 2933266 (-) False XLOC_007645
TCONS_00015003 mRNA upstream 140749 2661646 ~ 2933266 (-) False XLOC_007645
TCONS_00014999 other downstream 104011 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00014998 other downstream 104420 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014997 other downstream 104779 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00014996 other downstream 104803 2406945 ~ 2407048 (-) False XLOC_007639
TCONS_00014974 other downstream 298191 2123249 ~ 2213660 (-) False XLOC_007629
TCONS_00015013 other upstream 545736 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00015014 other upstream 545736 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015066 other upstream 3665817 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015075 other upstream 3736790 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015086 other upstream 4451971 6972868 ~ 6979330 (-) False XLOC_007693

Expression Profile

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