RNA id: TCONS_00014985


Basic Information

Item Value
RNA id TCONS_00014985
length 2415
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_007631
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 2337973 ~ 2369849 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGGCACTTAGATGTTGGGCTTCGTTTTTCTTTGTACTTTTGGCGACGTGGGAAACGGCTTTGTCTGTGACGCGATACTCTATACCGGAGGAGATGGAGCGCGGGTCGGTCGTCGCTAATCTAGCTGCTGATTTGGGGCTGGATGTTAGTGGACTAGCGCAGAGAGAGGTAAAACTTGATATTTTCCATAGCAAAAAATACCTTGATATTAATAAGAGGACGGGGGAGCTATTTATTGTTGAGAAAATGGACAGGGAAACTCTGTGCCCTGCTAAAACGACGACGTGCTTTTTAAAATTAGACTTAATAATTGAAAGCCCATTGCGTATGTTCAATATTGAATTGGGCATCACAGACATTAATGATAATGCTCCTCATTTCCGACGGGACAAGATTGAATTGGATGTTTCAGAGTCGGCATCACCAGGAGAAAGATTCTCTTTGCCAAATGCGTTTGATCCGGATGTTGGTGCCAACACAGTCAAGACTTATAAATTAAGCGAAAATGAACATTTCACTGTTGATATTCATTCTGGTAGTGATGGAACAAAATATGTCGATTTGGTGCTCATGAAGGCTTTAGATAGAGAGGACAAGGCCGTTCATAACCTGATCCTCACTGCCATTGATGGCGGAGTCCCTGCGCGCTCCGGCACAGCGAGTATCATCGTGCGCGTTCAAGACACAAATGACAACGCCCCGCAGTTCGACCAGGCGCTTTATTCTCTTAATATAAGCGAAAATTCGCCAGCAGGCACTGTTGTTGTTAAATTAAACGCTACTGATGCTGATGAAGGCCCAAACGCTGATCTCACATACTCATTTACGCTTTACACTTCGGAGAAAACGCAGGAAATGTTCTCTTTGGATTCAAATACTGGGGAAATAGCAGTAAAGGGCACCATTGATTATGAGGATATGAAAATATTTGAGATGTTCGTCGAGGCTAAGGATAATGGGCCAGTTCCGCTGTCTGGTCAGTCCAGAGTCTCTGTGTATGTTACTGACATGAACGATAATTACCCGGAGATCACTATAAAATCACTGAAGAATACTGTTGATGAAAACATCCCAGTGGGTTCTGTTATAGCTCTGGTTGGTGTCAGTGATAGAGACACTGGAGATAATGGAAAGGTTAATCTGACAATGAACAGGGCCTTGCCGTTTCTTTTAAACCAATCATCTGATCATCTCTACGAGTTATTAGTGTCAAAACCATTAGATCGTGAAGTTGTCCCAGAATATGAGATCACGTTAGTTGTGACGGATAAAGGGAATCCTCCCTTGTCTGATAATGAAACTATAACAGTGCATCTACTGGACGTCAATGATAACGCGCCGCAGTTCCCGCAGACTTTCTACACCATACCCGTTAAAGAAAACAACGCGCCTGGAGCTTTACTGGGCTCTATAACTGCAATAGATCCAGATTTAAACGAAAATCAATATTTAGTGTATTTCATCATAGAGAGGGAAATAGCCAACACCTCCATGTCCATGCTGTTCTCCATTAACCCGGAGAACGGCAATCTTTACGCGCTAAAGACGTTTGATTATGAGATAGAGAAGGATTTTCTGTTCCACATCGAGGCCAGAGACTCTGGTGTTCCTCCGCTCAGCAGTAACGTGACCGTTCACATTATTATCATGGACCAGAACGACAACACACCGCTTATAGTGTCTCCGTGGCGCGCGCAGGGCTCGGAGGTGAAGGAAACCATCCCGAGATCCACCGATAAAGGAACTCTGATCGCCAAAGTCATCGCCATAGACTCTGATTCAGTGCACAACTCTCGCATCACCTACCAGTTTCTCCAGAACACCGACGCTACGTTATTCAGCTTGGATCAATACAACGGAGAGATCCGGACCATGAGGATGTTCAGCTACAGAGACTCGCGAGACCAGCGGCTGGTGGTGATCGCCAAGGACAACGGAGAGCCCGCGCTCTCTGCTACAGTCACCATCAAACTGTCCACGGTGGAGACCGCGCTTAAAACCTACACTGAGGTGCCTTTGGAGTATGACATCTTCTCGGATTTAAACCTGTATCTGGTGATCGGACTGGGCTCTGTGTCATTTCTTCTGCTCATCACTATATTGGTGACCATCGTGCTCAAGTGCCAGAAGGCGAAGCCCAGCAAAGCGGCTCCTCCGAGCAGGAACAGTGTGATCAGCGAGAGGAACTCCACCATCGCGGACTCCACTCTGGTCTCCAACGATGCCTACTGGTACAGTTTATTTCTAGCAGAGACGAGGAAAGGAAAGCTGGTGGTCAGACAGCCTGTGCCAAAGGGAGCGAGATACATCGTGTCCAGCATCCCGAGGAGCACAGGACTGACCGAGACCAGCGACTCTGCTGCTTCTACTCTACAGTACTCAAAATGATCGAGGTCCCTTCTCCCGCTGGAG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-020731-3 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000189731

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016336 lncRNA downstream 220259 2118896 ~ 2121175 (-) False XLOC_007629
TCONS_00016335 lncRNA downstream 467387 1868374 ~ 1874047 (-) True XLOC_007625
TCONS_00016021 lncRNA downstream 479425 1861358 ~ 1862009 (-) True XLOC_007624
TCONS_00014939 lncRNA downstream 501532 1816294 ~ 1839902 (-) True XLOC_007623
TCONS_00014938 lncRNA downstream 519667 1816294 ~ 1821767 (-) False XLOC_007623
TCONS_00016337 lncRNA upstream 142002 2511851 ~ 2520897 (-) True XLOC_007642
TCONS_00016338 lncRNA upstream 481721 2851570 ~ 2853255 (-) True XLOC_007646
TCONS_00016339 lncRNA upstream 535411 2905260 ~ 2932953 (-) False XLOC_007645
TCONS_00016340 lncRNA upstream 535411 2905260 ~ 2933254 (-) False XLOC_007645
TCONS_00015021 lncRNA upstream 774883 3144732 ~ 3174559 (-) True XLOC_007651
TCONS_00014977 mRNA downstream 13581 2123323 ~ 2327853 (-) False XLOC_007629
TCONS_00014973 mRNA downstream 13609 2123123 ~ 2327825 (-) False XLOC_007629
TCONS_00014993 mRNA upstream 12841 2382690 ~ 2400269 (-) False XLOC_007638
TCONS_00014994 mRNA upstream 17212 2387061 ~ 2400668 (-) False XLOC_007638
TCONS_00014995 mRNA upstream 22338 2392187 ~ 2400668 (-) True XLOC_007638
TCONS_00015001 mRNA upstream 179464 2549313 ~ 2588216 (-) False XLOC_007643
TCONS_00015000 mRNA upstream 179464 2549313 ~ 2588216 (-) True XLOC_007643
TCONS_00014974 other downstream 127774 2123249 ~ 2213660 (-) False XLOC_007629
TCONS_00014937 other downstream 645592 1695724 ~ 1695842 (-) True XLOC_007622
TCONS_00014910 other downstream 1468535 865625 ~ 872899 (-) False XLOC_007604
TCONS_00014907 other downstream 1502038 836949 ~ 839396 (-) False XLOC_007603
TCONS_00014996 other upstream 37096 2406945 ~ 2407048 (-) False XLOC_007639
TCONS_00014997 other upstream 37129 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00014998 other upstream 37479 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014999 other upstream 37887 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00015013 other upstream 696784 3066633 ~ 3071588 (-) False XLOC_007649

Expression Profile

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