Fish Transcriptome and Expression Database

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model fish

XLOC_007683 (FP103005.1)

Basic Information

Item	Value
gene id	XLOC_007683
gene name	FP103005.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007125.7
NCBI id	CM002898.2
chromosome length	52660232
location	6186714 ~ 6186833 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015066
tgccacagccatatcaccctgctgcCCAAGACCTGTTCCTCACTGAATctaagcaggactgagcctggttagtagtacatgaatgggagaccacatgggaaaactatgttgcttttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000081843

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00015066	True	120	rRNA	0.48	1	6186714	6186833

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_007682	FP103005.3	coding	downstream	27963	6155374 ~ 6158751 (-)
XLOC_007681	loxl3a	coding	downstream	270134	5866894 ~ 5916580 (-)
XLOC_007680	kazald2	coding	downstream	369675	5804928 ~ 5817039 (-)
XLOC_007679	tlx2	coding	downstream	496351	5656510 ~ 5690363 (-)
XLOC_007678	npm1b	coding	downstream	544253	5588029 ~ 5642461 (-)
XLOC_007684	NA	coding	upstream	6416	6193249 ~ 6204004 (-)
XLOC_007685	hdx	coding	upstream	22977	6209810 ~ 6229020 (-)
XLOC_007686	elp1	coding	upstream	59109	6245942 ~ 6286966 (-)
XLOC_007687	NA	coding	upstream	143408	6330241 ~ 6402769 (-)
XLOC_007688	CT009487.1	coding	upstream	275440	6462273 ~ 6479403 (-)
XLOC_007641	CU855896.1	misc	downstream	3778874	2407736 ~ 2407840 (-)
XLOC_007640	CU855896.2	misc	downstream	3779283	2407328 ~ 2407431 (-)
XLOC_007639	CU855896.3	misc	downstream	3779642	2406945 ~ 2407072 (-)
XLOC_007677	BX276088.1	non-coding	downstream	623523	5560755 ~ 5563191 (-)
XLOC_007674	NA	non-coding	downstream	857538	5327056 ~ 5329176 (-)
XLOC_007673	BX510929.1	non-coding	downstream	1073923	4952114 ~ 5112791 (-)
XLOC_007672	NA	non-coding	downstream	1302269	4861940 ~ 4884445 (-)
XLOC_007690	NA	non-coding	upstream	436617	6623450 ~ 6727717 (-)
XLOC_007700	BX890601.1	non-coding	upstream	1174916	7361749 ~ 7361865 (-)

Expression

Co-expression Network