RNA id: TCONS_00015033


Basic Information

Item Value
RNA id TCONS_00015033
length 744
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_007657
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 4047215 ~ 4076480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATCCTGAATCAGCAGATGAGTGTGTCCATCTCTCTCTCGGtctctcagtcagtcagtctctCTCAGGACAGCAGCATCATGACTCGAACACTCCTCAAAATCTACAccctcttcatcctcctcctgTGCCGACAGTGCGACGCAAACCGCAAACTCCTGGTGTTTCTGATCGACGGATTCCGCCACGATTATATGGACGATTTACACAACTTGCCCGGCTTTCGAGAGATCGTGGAAAACGGCGTCAAAGTGGATTACCTGACTCCAGACTTCCCGAGTCTGTCCTATCCGAACTACTACTCTCTAATGACCGGACGCCACTGCGAGGTGCACCAAATGACTGGGAATTACATGTGGGACACAGACACCCAGAAGGAATTCCTGATCGGAACCAATCCGGACAGCCGTCTGCCCATGTGGTGGGATGGATCAGAGCCGCTGTGGGTCACCATGCAGAAACTAGGGAAAAAAGTCTATATGTACTACTGGCCAGGTTGGCGCACATCTAACTAGTCATGATTAAAGCACAAATCAAGTCTACAGTACATCCACACGGCCTTTCATAAAGTGTTTTGCCCTATTTAACAAAAATCTGTATACACTCATTGTGAGAAATAcaaatttactatattttattacggTTACTGTACATTCAGTACTTGAAATCAAATTACAGTTAGATCTGAAAGTGTTATAAATGCTTACACATACACTTTAAAGAATAAGGCAAAAATAAGGCA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0019695 choline metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047390 glycerophosphocholine cholinephosphodiesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00565 Ether lipid metabolism
ko00537 Glycosylphosphatidylinositol (GPI)-anchored proteins

ZFIN:

id description
ZDB-GENE-031205-1 Predicted to enable glycerophosphocholine cholinephosphodiesterase activity and glycerophosphodiester phosphodiesterase activity. Predicted to be involved in choline metabolic process and lipid metabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be located in membrane. Predicted to be anchored component of membrane and integral component of membrane. Predicted to be active in plasma membrane. Is expressed in cerebellum; pectoral fin musculature; pharyngeal arch 3-7 skeleton; pronephric duct; and pronephros. Orthologous to human ENPP6 (ectonucleotide pyrophosphatase/phosphodiesterase 6).

Ensembl:

ensembl_id ENSDART00000165128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016024 lncRNA downstream 694784 3362794 ~ 3366297 (-) False XLOC_007654
TCONS_00016022 lncRNA downstream 702027 3326214 ~ 3359054 (-) False XLOC_007653
TCONS_00015026 lncRNA downstream 702027 3344610 ~ 3359054 (-) False XLOC_007653
TCONS_00016023 lncRNA downstream 702027 3346816 ~ 3359054 (-) True XLOC_007653
TCONS_00015024 lncRNA downstream 703495 3325867 ~ 3357586 (-) False XLOC_007653
TCONS_00015036 lncRNA upstream 32483 4108912 ~ 4121007 (-) True XLOC_007658
TCONS_00015038 lncRNA upstream 84426 4160855 ~ 4163421 (-) True XLOC_007660
TCONS_00015042 lncRNA upstream 166047 4242476 ~ 4273296 (-) True XLOC_007662
TCONS_00016025 lncRNA upstream 210824 4287253 ~ 4287995 (-) True XLOC_007663
TCONS_00016026 lncRNA upstream 520074 4596503 ~ 4599936 (-) True XLOC_007666
TCONS_00015030 mRNA downstream 16536 3960541 ~ 4044545 (-) False XLOC_007656
TCONS_00015031 mRNA downstream 17263 3960917 ~ 4043818 (-) True XLOC_007656
TCONS_00015029 mRNA downstream 117064 3717745 ~ 3944017 (-) True XLOC_007655
TCONS_00015028 mRNA downstream 679778 3367694 ~ 3381303 (-) True XLOC_007654
TCONS_00015027 mRNA downstream 688149 3363368 ~ 3372932 (-) False XLOC_007654
TCONS_00015034 mRNA upstream 7691 4084120 ~ 4121052 (-) False XLOC_007658
TCONS_00015035 mRNA upstream 8576 4085005 ~ 4120636 (-) False XLOC_007658
TCONS_00015037 mRNA upstream 48934 4125363 ~ 4145594 (-) True XLOC_007659
TCONS_00015039 mRNA upstream 87344 4163773 ~ 4177311 (-) False XLOC_007661
TCONS_00015040 mRNA upstream 87687 4164116 ~ 4170654 (-) True XLOC_007661
TCONS_00015014 other downstream 989443 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 989493 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 1653241 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00014998 other downstream 1653650 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014997 other downstream 1654009 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00015066 other upstream 2110285 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015075 other upstream 2181258 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015086 other upstream 2896439 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 3285320 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 4307120 8383549 ~ 8383923 (-) True XLOC_007711

Expression Profile

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