RNA id: TCONS_00016022


Basic Information

Item Value
RNA id TCONS_00016022
length 2507
lncRNA type inter_gene
GC content 0.42
exon number 8
gene id XLOC_007653
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 3325867 ~ 3359054 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTTTCATCCCTCCTGCTTAATATGGTGTCCAATAAAACCTTGAATTGCTGAAATTCTTGCTCTCTGTTTCATGTTTCGTCTTTGTTTAGTTGTGAAGTGTCTGCCGTTCCCCGTATGAGAAAACTTCCTCTTCAGTTGGTGAGATGCTGTTTCCTCATGTGTCAGTGTGAGTCTCTCTGCAGAGCACACACACTcACACTTAAAATCTTCTCTTGTGGATGCTGGAGTTGAGGAAGATCATGCTGGTGTTTGGGCTGCTGCTGCTGATACTGCAAACTGCTGCATGTGTGGAGCGGTTCTGCAGTTTTACTCAGTCAGATCCCTGTTATGCAGCTCTGGGACACAAACTCAACCTGCAGATGGTGAACGCCAGTAAATATAAACTGACCATAATAAAGAGAATAGACAACACAGATGATGCAGCTTGTAGAGTAAGAAATGACACAAAGAGAGCAAATGAATGTGATCTTTATATAAACAGACCTGAAGTGAAAATCATTAATGGGACTGTGATGATAAACCCGGTGAAGAGAGAAGATTCAGGAGATTTCAGAATACAATTTAATAATCCTGACGGCACAGAAACATCTCAAGATCTTCAGGTGAATGTTGAAGCTCCTGTTGGCTCAGTGAAAGTGTCAATCATCTGCTCCTCCAATCAGATGAGGTCAGTGTCCTGCTCCTCTGAGGGGGATCAGCTCCTCTACAGCTGGACTCTCAATGGAGAAACACAGACAGATGGAAACTCCACCATTCAGCTTCAAGAGGAAACTAAAGGAGAAATCACCTGCACTGTGAAGAACCACGTCAGCCAAGGAAACACGACTGTTAGCATTAAAGACTGTCCTGGATCAACTACTGATGCTGTGACCTCTAGTTTGACCAcaaagacatctgaaaatgtTGCACGGTACTTATTAATCGCTATGGGCTGTGTTGCGGTGATCCTGATTCTACTGTTCATCATTGTATACTACGTTTACAGGAAGAAACAACACAAGTCACCAACACCAGCACCTCCTTCTGGAGACGTGGAGCTCATTTACACTCACATCTCTCATCAAAAAACCAACAAACAAGGTGCAGGAAAGAAAAAAGAAGCGTCTCCAGATGATGATGTGGAATATTCTGCGGTCAGAGttcagaaaaagaagaagaacaagCCGGAGGAAGAGGTTCAGTACGGAGAGGTGACGTTCAGCCCTAAACACTCAAACACCCAaaatcagcagcagcagcagcagcagccggCGGAGGAGTGTGTGTACTCAGAGGTACATAGAAGCTAGAAGAgtctgagaaacacacacacacacacacacacacacacacacacactctctgctcAGTCAGATTTACAGTCCACACACATGTGCATTAGGAGCTTGTGTATATTATGatgctttatttcagtatgttaatgaTATGTGTGGCATGTTATACTGAATactgattcattggatttacacttttttttttaaggtaaggggTTGCAAacagggtggcacagtggttatcactgtggcctcacaggaaaaaggttgctggtttagtCCAGGGTGgtccagttggcgtttctgagtagagtttgcatgttcctcccgtgttggcgtgggtttcctccgggtgattcGGTTTCCccttcagtccaaacacatgcgctataggtgaattgaataaactaattcatttgttgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgaatgagactgtatgggtgtttcccagaactgggttgcagctgtaagggcatgagctgtgtaaaaaaatataccagaatagttggtggttcattctgctgtggcgacccctgataaataagggaataagccgaaggaaaaggaataaatgatggttgcaaactatttatatgggctgaatttaaacaaactaaatttaagCTGAGCATtactatattttgtttgtttgtttaaattcaggccgtataaatagtttgcaatgacttacctttaaaaaaaagagtaaattcaatgaatcattttttttcagtgtatgaacATAGAATTGTACAGAGAAATGACATTTTGATAAATACAGAGATGCTATTAGAGTCtgagaaacgcacacacacacacacacacaaacacacttctgCTTGGTCAGATTTACAGTCCACCACACGTTTACTCACAGGTACATAGAAGCTAGAAGAATCTgagaaacacacgcacacacacacacgcgcacagtCAGATTTACAGTCCACAAACATGCGCATTGAGAGCATGTGTGAATAATGATGAGGTATTTCCGTATGTTAATGATGATGTTGATGTTGTGTGGCATGTTATGAACATAGAATTGTACATAGAGATGACATTTGTATGCTATTCCCCTGGGCTTTCTTGTCTTAATATTAAATTCAAAAAGATTTGCTGTGTTTGttggaaaataaaaataggaaGCATGCTTTAAAGTAGAGTG

Function

GO:

id name namespace
GO:0061097 regulation of protein tyrosine kinase activity biological_process
GO:0004594 pantothenate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015021 lncRNA downstream 151655 3144732 ~ 3174559 (-) True XLOC_007651
TCONS_00016340 lncRNA downstream 392960 2905260 ~ 2933254 (-) False XLOC_007645
TCONS_00016339 lncRNA downstream 393261 2905260 ~ 2932953 (-) False XLOC_007645
TCONS_00016338 lncRNA downstream 472959 2851570 ~ 2853255 (-) True XLOC_007646
TCONS_00016337 lncRNA downstream 805317 2511851 ~ 2520897 (-) True XLOC_007642
TCONS_00016024 lncRNA upstream 3740 3362794 ~ 3366297 (-) False XLOC_007654
TCONS_00015033 lncRNA upstream 702027 4061081 ~ 4076429 (-) True XLOC_007657
TCONS_00015036 lncRNA upstream 749858 4108912 ~ 4121007 (-) True XLOC_007658
TCONS_00015038 lncRNA upstream 801801 4160855 ~ 4163421 (-) True XLOC_007660
TCONS_00015042 lncRNA upstream 883422 4242476 ~ 4273296 (-) True XLOC_007662
TCONS_00015022 mRNA downstream 58059 3186485 ~ 3268155 (-) False XLOC_007652
TCONS_00015023 mRNA downstream 96830 3190050 ~ 3229384 (-) True XLOC_007652
TCONS_00015019 mRNA downstream 145267 3143421 ~ 3180947 (-) False XLOC_007651
TCONS_00015020 mRNA downstream 145373 3143901 ~ 3180841 (-) False XLOC_007651
TCONS_00015018 mRNA downstream 151644 3143337 ~ 3174570 (-) False XLOC_007651
TCONS_00015027 mRNA upstream 4314 3363368 ~ 3372932 (-) False XLOC_007654
TCONS_00015028 mRNA upstream 8640 3367694 ~ 3381303 (-) True XLOC_007654
TCONS_00015029 mRNA upstream 358691 3717745 ~ 3944017 (-) True XLOC_007655
TCONS_00015030 mRNA upstream 601487 3960541 ~ 4044545 (-) False XLOC_007656
TCONS_00015031 mRNA upstream 601863 3960917 ~ 4043818 (-) True XLOC_007656
TCONS_00015014 other downstream 254576 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 254626 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 918374 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00014998 other downstream 918783 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014997 other downstream 919142 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00015066 other upstream 2827660 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015075 other upstream 2898633 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015086 other upstream 3613814 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 4002695 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 5024495 8383549 ~ 8383923 (-) True XLOC_007711

Expression Profile

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