RNA id: TCONS_00015030


Basic Information

Item Value
RNA id TCONS_00015030
length 3989
RNA type mRNA
GC content 0.51
exon number 19
gene id XLOC_007656
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 3960541 ~ 4044545 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAGTAGAAAGCAACCTACGCGCGAGCGTCTCTTTTGTCCGCCAATCAAATCAGCGGACGGCATGCTGCGTCATTAATATTCATGTTCAATCCCTTCTCCATAGTACAACTCGCAAATTCGCCTGTCGAAAGGCAGCCGAGGATCTATAAGCAAAGCAGAGACCGCTTGTCAGCGCTACAAATTGACGATAAGTTTAATTCTTTAGTACATTTCGGGTCAATTTTGACTGATAGCAAAAATAAATCTGAACTACCCTCAGCACGTACAGCTTTATTTCACATTTGAAGCTTGAAAGTTAAAGTTATCGCGTGATGGCTCTCCGTTGTTTGTGCTCGCGCGTCAACGGCTCCTCGAGATGTTTTCATATATTCGGACGAGTTTAACGTAATGTCAACATTTGCTTGCTTCCCCTCATCCTATGACGTGAGTACTCGGTGTTCTTGTGCAATTGTGGAGGATTTGAATTAGCAGCCATTTAAGCTGTCCTCGAGCTGTCCTAGAGATTTCAGGTGCTCTGCTGTCATTTAATAACGGCTCCGATGCAACAGTTACACGCGCGTTTCCATCATAAAGTGTCACCGGAGGGCCGGATCGTCCGCCTTTCTCCTCTGAACTGAAGCCATACATTGTGATGAGTGAAATCTGGGCTGTGAACTGGAGCGACATGCTGCCCGTCTCTTGTGGAGCACACGTGAGGAGATGTCATTTCCAGCAGCAGCGGCATCATGCGTCCTGATGGccgaagcagcagcagcagcagcggcagGTCGGATGTCCTCATGCCCAGCGCCGTCTACCCGTCCCTGGTCCTCGGCGTCGCGGCGGCGGTGCTGCTCTTCCAGTTCGGCTCTGGAGGACTTGGTCTCACCTCGTTTTTCCTCAAACTCTTTATTTATGTGTCCTTCGCGTTGTTCTGCTTCCTGCTGGGCAGTTTCGGGCTGCTGGTGAAGAAAAGCCCCCTGAGGATCAGCAGGTTTGACACCACGAAGAGACAGTCGGACAAGCTCGTGGATTTATTCAATAAGTTAATGGGCCGGTTCTGTGTGCCTCTGCTGGATTCAGCCCAGACCAGACGGGTCGTAGTTTCTCTCAATGTAGATAAAGCCCTTAAAGAAGTTTTTGACTACAGCTATCGGGACTATATTCTGTCATGGTACGTCCCCTTGAGTCGAGATGAGGGCCAGCTGTACCAGATGCTGTCGGAGGACTTCTGGGAAATGATCAAACAGGTGCGAATGCGTCTGTCTGAGGTGGACGTGGTCAACCTCGTCTGTAACGACATGGTCAAAACCCTCCACCAGCACTTCTGTGACCTCAAAGCTGCTAACACAAGGCTGGAGGAAGTTCCCCGGCCATTTCCGTTGCATCCATGTCTGCAGAGTCCAGATGAGGAACTGCGTTTCCTGCGCTGTTGTGCTCGTCTGCTCCTGCTGCGTCTGCTGCCCGTGCGGGATGCTCGCTCTCGCAGTCTACGCCTCCTCCTGGTGGAGGTCGTCACTACTAAAGTGCTCAAGCCGTTGGTGGATGTTTTGAGCGATCCGGACTACATTAACCGCATGCTGCTAGCTCAGTTAGAGCACAGGGAGCAGGTGAACGAGCATCATAAGAAAGCGTACACGTATGCGCCGTCCTACGAGGAGTTCATCAAACTCATCAGCAGCAGCTCTGACATACAGTTCCTCAAACAGCTCAGGTATCAGATAGTTGTGGAGATCATCCAGGCGACCACCATCAGCAGTATTCCTCAGCTCAAGAGACAGAAGGACAGTAAAGGAAAAGAGGCGGCAGCGCTGAAGGCCGATCTGTTACGTGCCAGAAACATGAAGCGTTACATTAACCAGCTCACGGTGGCCAAGAAGCAGTGCGAGAAGCGCATTCGGCTCCTCGGGGGACCAAACTATGAGCAGCAGGAGGACGGAGGCCAGGAGGAAGGAGACGGGCCTCAGAGCCAACGGATCCTCCAGTTCGAGGAGATCATGTCCAACTCTGTATATCGGGATCATTTCCGCGTCTACATGGAGCGTGTGGACAAGAGGGCTCTCATCAGCTTCTGGGAGCTGGTGGAGATGCTCAAGACGGCCAACAAGAATGAAGTGCCGCAACTGGTGGGCGAGATCTACCAGAACTTCTTCGTAGAGAGCAGGGAGATCCCGGTGGAGAAAGCTCTGTATAAAGAGATCCAGCAGACTCTGGTGGGGAACAAGGGCACAGACGTGTTTCACAGGATCCAGGGAGACGTGTACGAGACCATGAAGGAGCGTTATTACCCATCATTCCTAGTAAGCGACCTGTACGAGCGGCTGATTAAACGAGAGGAGCAGAGGAGCAGCTCACAGTCCAGCAGCGAGGAGAAAGACGACACTGGTCAGGTGATGGAAGGAGGAGACGTGGCTCTGGATGAAGGCAGCAAAGGCATCAATGAACAGGCCAGTTACGCTGCCACCAAACTCCACCAGCTGTACGAGAGACTGGAATACAAACGGCAAGCCCTGGGCTCGATCCAGAATGCACCGCGACCTGATAAAAAGATTGTGTCGCTCCTGAAGGATGAAATCAGTGCCATGGAGAAGGAGCACAGTGACCTGGAGCTGCACATCTCCCGGACTGACTGCTGGTGTGAAAACCTGGGCACGTGGCGAGCCGTCGTCAGCACCGCAGAGgcCTCTGAGGAGAATGGCGAGCAGATGGCGTGTTATTTCGTAGCCGTGAGTCTGTCAGAAGAAGACGATTGTAAGAATAACCATTGGACCGTCAGCAGGAAGCTCATCGAGTTTCAGGCTCTGCACCGGAAGCTGACGGAGTGTTTTCCATCACTCAAGAAGGTCCAGCTTCCCTCACTCAGCAAGCTGCCCTTCAAATCCATCGACCAAAAATTCCTTGACAAATCCAAAAATCAACTCAACGCATTTTTACAGaaagtGCTGACGGATGAGCGCATGTGTCAGAGCGAGGCGCTGTATGCGTTTCTCAGCCCATCTCCAGAGCACCTGAAGGTCATCGACATCCAGAAGAAATCCTCCTTCTCCCTCGCCTCCTTCCTGGAGAGGCTGCCGGGAGACTTCTTCTCACACCAGGAGgatgaAGCTGAAGATGACAGTGATCTCTCAGACTATGGCGATGAGCCGGACGGCAAGAAAGACGCGCTGGCCGAGCCCTGCTTCATGCTGATCGGAGAGATCTTTGAACTCAGGGGCATGTTCAAGTGGGTGAGGAAGACACTAATTGCACTAGTTCAGGTCACTTTTGGACGCACTATAAACAAGCAGATCAGAGACACTGTAAACTGGATCTTCAGTGAGCAGATGATGGTTTACTACATCAATGTTTTCCGGGACACATTTTGGCCCAACGGAAAACTGGCGCCTCATAACAAAAGCCGCTGTGAGAGCGAACGCAGAGAAACCAAGGAGAGAGCGCAGCAGAAGCTTCTAGACAACATCCCAGATGCTCTTCAGAATCTGGTGGGGCAGCAGAACGCCAGATACGGCATCATCAAGATCTTCAATGCCCTTCAGGAGAGCAGCGCTAACAGACATCTACTCTACATGTTGCTGGAGATGCTGGTGAAAGAGCTCTATGCTGAGCTGAGTGTGGAGGCTGTTCAGACCTGAAGGCTGGAGGTTTGTTTCTGCTGGATCTCCTGCGTCAGGAATCACCCGGTGTGCTTGAATGTGTTGTGGGGGAGCAGGTCAGATCCACTGCCACTCGTCACCTTCTGATTTTCTTTCGTCTTCTCTTCTGTAATGTGAAAAATACGATGGAATGAGTGTTACACACCTGTATAAAGAAGAGGCCAGACCTCTGGAAACTCACTATACATCATTGTGACCATTATCAAAGCTTTTAATCGTGCAATATGTCATGTACAGTTATTGTGAAGGTTCTGTttgtgatattattattaatattgttattattatagaattttatttttaccaaaattagACTAGAGCATTTATAAGCAATAAATTGCAAAAGAACTGTCAC

Function

GO:

id name namespace
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-121105-11 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and liver. Orthologous to human SNX25 (sorting nexin 25).

Ensembl:

ensembl_id ENSDART00000169527

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016024 lncRNA downstream 594244 3362794 ~ 3366297 (-) False XLOC_007654
TCONS_00016022 lncRNA downstream 601487 3326214 ~ 3359054 (-) False XLOC_007653
TCONS_00015033 lncRNA upstream 16536 4061081 ~ 4076429 (-) True XLOC_007657
TCONS_00015036 lncRNA upstream 64367 4108912 ~ 4121007 (-) True XLOC_007658
TCONS_00015038 lncRNA upstream 116310 4160855 ~ 4163421 (-) True XLOC_007660
TCONS_00015042 lncRNA upstream 197931 4242476 ~ 4273296 (-) True XLOC_007662
TCONS_00016025 lncRNA upstream 242708 4287253 ~ 4287995 (-) True XLOC_007663
TCONS_00015029 mRNA downstream 16524 3717745 ~ 3944017 (-) True XLOC_007655
TCONS_00015028 mRNA downstream 579238 3367694 ~ 3381303 (-) True XLOC_007654
TCONS_00015027 mRNA downstream 587609 3363368 ~ 3372932 (-) False XLOC_007654
TCONS_00015022 mRNA downstream 692386 3186485 ~ 3268155 (-) False XLOC_007652
TCONS_00015023 mRNA downstream 731157 3190050 ~ 3229384 (-) True XLOC_007652
TCONS_00015032 mRNA upstream 2670 4047215 ~ 4076480 (-) False XLOC_007657
TCONS_00015034 mRNA upstream 39575 4084120 ~ 4121052 (-) False XLOC_007658
TCONS_00015035 mRNA upstream 40460 4085005 ~ 4120636 (-) False XLOC_007658
TCONS_00015037 mRNA upstream 80818 4125363 ~ 4145594 (-) True XLOC_007659
TCONS_00015039 mRNA upstream 119228 4163773 ~ 4177311 (-) False XLOC_007661
TCONS_00015014 other downstream 888903 3066633 ~ 3071638 (-) False XLOC_007649
TCONS_00015013 other downstream 888953 3066633 ~ 3071588 (-) False XLOC_007649
TCONS_00014999 other downstream 1552701 2407736 ~ 2407840 (-) True XLOC_007641
TCONS_00014998 other downstream 1553110 2407328 ~ 2407431 (-) True XLOC_007640
TCONS_00014997 other downstream 1553469 2406978 ~ 2407072 (-) True XLOC_007639
TCONS_00015066 other upstream 2142169 6186714 ~ 6186833 (-) True XLOC_007683
TCONS_00015075 other upstream 2213142 6257687 ~ 6263305 (-) True XLOC_007686
TCONS_00015086 other upstream 2928323 6972868 ~ 6979330 (-) False XLOC_007693
TCONS_00015098 other upstream 3317204 7361749 ~ 7361865 (-) True XLOC_007700
TCONS_00015108 other upstream 4339004 8383549 ~ 8383923 (-) True XLOC_007711

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00015861 True 2859 mRNA 0.53 19 CM030132.1 26062313 ~ 26117702 (-)